HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:31.1 nTPM
HPA Brain:64.4 nTPM
GTEx:31.1 nTPM
FANTOM5:92.5 Scaled Tags Per Million
Pig:44.7 nTPM
Mouse:78.2 nTPM
Allen mouse:9.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037480
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.4
Sample id Sample description nTPM
Hippocampus
nTPM: 55.8
1898 Male, age 80, left hemisphere 65.4
1855 Male, age 76, left hemisphere 62.6
2621 Female, age 67, right hemisphere 62.2
2148 Female, age 91, left hemisphere 53.4
1911 Female, age 85, right hemisphere 47.4
2529 Female, age 94, left hemisphere 43.5
Dentate gyrus
nTPM: 56.9
1927 Female, age 91, both hemispheres 71.1
2010 Male, age 76, both hemispheres 63.3
2246 Female, age 85, both hemispheres 62.8
2531 Female, age 67, both hemispheres 50.5
2530 Female, age 94, left hemisphere 47.0
2528 Male, age 74, both hemispheres 46.9
Entorhinal gyrus
nTPM: 53.4
1938 Female, age 85, left hemisphere 60.5
2764 Male, age 80, right hemisphere 56.5
2613 Female, age 94, left hemisphere 55.8
1787 Male, age 76, left hemisphere 54.8
2117 Female, age 91, right hemisphere 46.5
2686 Male, age 75, right hemisphere 46.1
Hippocampus, CA1
nTPM: 64.4
2749 Male, age 80, left hemisphere 97.8
1873 Female, age 85, both hemispheres 70.2
2527 Male, age 74, both hemispheres 53.7
2082 Female, age 91, right hemisphere 53.1
2045 Male, age 76, both hemispheres 47.3
Hippocampus, CA2
nTPM: 58.6
1963 Male, age 80, left hemisphere 80.3
1892 Male, age 76, both hemispheres 73.0
2249 Male, age 74, both hemispheres 50.4
1940 Female, age 85, left hemisphere 49.4
2437 Female, age 94, left hemisphere 49.4
2113 Female, age 91, right hemisphere 49.1
Hippocampus, CA3
nTPM: 53.3
2137 Male, age 80, left hemisphere 62.5
1867 Male, age 76, both hemispheres 56.3
2436 Male, age 74, both hemispheres 53.4
2620 Female, age 94, left hemisphere 50.9
1891 Female, age 85, both hemispheres 49.4
2861 Female, age 67, both hemispheres 47.2
Parahippocampal cortex
nTPM: 55.4
1850 Male, age 80, both hemispheres 64.3
1933 Female, age 85, both hemispheres 61.8
1990 Female, age 91, right hemisphere 59.1
2250 Female, age 67, right hemisphere 57.5
2693 Female, age 94, both hemispheres 56.0
2245 Female, age 91, both hemispheres 54.9
2018 Male, age 76, both hemispheres 52.7
2532 Female, age 72, left hemisphere 51.7
2622 Female, age 67, right hemisphere 51.3
2692 Male, age 74, both hemispheres 44.4
Perirhinal gyrus
nTPM: 61.8
1847 Female, age 91, left hemisphere 74.7
1794 Male, age 80, right hemisphere 61.8
1841 Female, age 85, right hemisphere 59.8
2521 Female, age 94, right hemisphere 57.1
2848 Male, age 76, right hemisphere 55.5
Subiculum
nTPM: 49.1
1977 Female, age 85, both hemispheres 55.9
1901 Male, age 80, both hemispheres 54.4
2438 Female, age 94, left hemisphere 47.7
2042 Male, age 76, both hemispheres 46.4
2619 Male, age 74, both hemispheres 45.0
2729 Female, age 91, right hemisphere 45.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.1
Samples: 197

Max nTPM: 71.3
Min nTPM: 7.9
Std nTPM: 11.0
Median nTPM: 29.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 71.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 69.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 64.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 60.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 57.1
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 56.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 55.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 54.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 54.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 53.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 53.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 92.5
FF:10169-103B7 60 years, female 122.5
FF:10153-102I9 76 years, female 62.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 44.7
Pig sample Sample description nTPM
Subiculum
nTPM: 36.5
Samples: 4

Max nTPM: 39.3
Min nTPM: 33.6
Sample A Female 39.3
Sample B Female 38.1
Sample C Male 34.9
Sample D Male 33.6
Dorsal hippocampus
nTPM: 43.3
Samples: 4

Max nTPM: 48.2
Min nTPM: 37.1
Sample A Female 48.2
Sample B Female 43.2
Sample C Male 37.1
Sample D Male 44.5
Entorhinal cortex
nTPM: 36.9
Samples: 4

Max nTPM: 41.1
Min nTPM: 31.8
Sample A Female 36.7
Sample B Female 41.1
Sample C Male 38.0
Sample D Male 31.8
Ventral hippocampus
nTPM: 44.7
Samples: 4

Max nTPM: 52.9
Min nTPM: 34.5
Sample A Female 52.9
Sample B Female 42.2
Sample C Male 49.2
Sample D Male 34.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 78.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.3
Samples: 4

Max nTPM: 72.7
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 65.5
Sample C Female 72.7
Sample D Female 67.5
Hippocampal formation
nTPM: 78.2
Samples: 4

Max nTPM: 81.7
Min nTPM: 74.6
Sample A Male 80.3
Sample B Male 74.6
Sample C Female 81.7
Sample D Female 76.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.3
74658238 Antisense, RP_060220_02_D04, Mouse strain C57BL/6J (56 days, male) 10.0
68196906 Antisense, RP_041116_01_C11, Mouse strain C57BL/6J (56 days, male) 8.6

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