MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.4 nTPM
HPA Brain:174.1 nTPM
GTEx:47.4 nTPM
FANTOM5:250.0 Scaled Tags Per Million
Pig:79.6 nTPM
Mouse:42.1 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 174.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 146.2
1830 Male, age 51, unknown 169.3
1870 Female, age 42, unknown 157.8
1833 Male, age 53, unknown 157.3
2411 Female, age 72, unknown 157.2
2586 Male, age 75, left hemisphere 147.9
2019 Male, age 18, unknown 147.7
2666 Male, age 74, left hemisphere 133.8
2828 Female, age 72, unknown 133.2
1827 Male, age 72, unknown 128.8
2219 Male, age 76, both hemispheres 128.7
Dorsal raphe nucleus
nTPM: 122.9
2750 Male, age 76, both hemispheres 164.4
2016 Female, age 72, unknown 126.7
1828 Male, age 53, unknown 117.8
2047 Male, age 72, unknown 114.8
2298 Female, age 72, unknown 91.0
Inferior colliculus
nTPM: 121.0
1848 Female, age 42, unknown 126.9
2849 Male, age 72, unknown 125.1
1890 Male, age 53, unknown 123.0
2097 Female, age 72, unknown 109.0
Median raphe nucleus
nTPM: 112.0
2220 Male, age 76, midline 112.0
Periaquaductal grey, anterior
nTPM: 113.7
2502 Female, age 75, unknown 136.2
1947 Male, age 18, unknown 107.4
1795 Male, age 51, unknown 97.4
Periaquaductal grey, dorsal
nTPM: 105.4
2464 Female, age 72, unknown 128.7
1831 Male, age 72, unknown 108.8
2850 Male, age 76, both hemispheres 92.7
1840 Male, age 53, unknown 91.6
Periaquaductal grey, lateral
nTPM: 106.8
2053 Male, age 18, unknown 125.4
2272 Male, age 74, both hemispheres 101.6
2140 Male, age 76, both hemispheres 93.4
Pretectal area
nTPM: 117.2
2407 Male, age 75, both hemispheres 144.0
1815 Male, age 53, unknown 139.5
2316 Male, age 76, right hemisphere 137.0
2825 Male, age 18, unknown 126.8
1817 Female, age 42, unknown 121.5
2007 Male, age 72, unknown 121.2
1944 Female, age 72, unknown 113.0
1816 Male, age 51, unknown 106.1
2273 Male, age 74, both hemispheres 101.6
2224 Female, age 72, unknown 95.1
2667 Female, age 75, unknown 83.8
Red nucleus
nTPM: 174.1
1865 Male, age 51, unknown 207.5
1904 Male, age 53, unknown 190.6
2503 Female, age 72, unknown 188.7
1821 Female, age 72, unknown 179.6
2588 Male, age 74, left hemisphere 176.9
2823 Male, age 76, right hemisphere 175.2
1954 Female, age 42, unknown 172.9
2227 Male, age 72, unknown 169.2
2769 Male, age 72, unknown 169.2
2785 Male, age 18, unknown 165.5
2725 Female, age 75, unknown 148.8
2584 Male, age 75, left hemisphere 144.5
Substantia nigra
nTPM: 119.8
2583 Male, age 75, right hemisphere 147.9
2590 Female, age 75, unknown 139.6
2409 Female, age 72, unknown 132.3
1889 Female, age 72, unknown 123.6
1851 Male, age 51, unknown 116.3
2699 Male, age 18, unknown 112.3
1941 Male, age 53, unknown 111.1
2665 Male, age 74, both hemispheres 110.9
2241 Male, age 72, unknown 109.8
1916 Female, age 42, unknown 94.6
Superior colliculus
nTPM: 142.3
1913 Female, age 42, unknown 177.8
1995 Male, age 72, unknown 168.2
2668 Female, age 75, unknown 159.2
1895 Male, age 76, right hemisphere 150.9
2587 Male, age 74, left hemisphere 146.7
1839 Male, age 51, unknown 136.2
2664 Male, age 75, both hemispheres 127.7
2261 Male, age 18, unknown 124.4
1796 Male, age 53, unknown 118.1
2087 Female, age 72, unknown 113.8
Ventral tegmental area
nTPM: 126.6
2223 Female, age 72, unknown 153.8
2410 Female, age 72, unknown 144.5
2021 Male, age 53, unknown 128.1
1942 Male, age 51, unknown 119.8
1915 Female, age 42, unknown 107.7
2218 Male, age 76, both hemispheres 105.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.4
Samples: 139

Max nTPM: 125.3
Min nTPM: 11.6
Std nTPM: 22.7
Median nTPM: 44.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 125.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 118.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 116.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 114.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 108.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 102.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 95.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 92.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 87.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 83.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 250.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 250.0
FF:10158-103A5 76 years, female 250.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 75.7
Samples: 4

Max nTPM: 108.2
Min nTPM: 59.1
Sample A Female 60.2
Sample B Female 59.1
Sample C Male 75.4
Sample D Male 108.2
Midbrain
nTPM: 79.6
Samples: 4

Max nTPM: 108.3
Min nTPM: 67.9
Sample A Female 108.3
Sample B Female 69.8
Sample C Male 67.9
Sample D Male 72.4
Periaqueductal gray
nTPM: 63.7
Samples: 3

Max nTPM: 66.0
Min nTPM: 61.2
Sample B Female 66.0
Sample C Male 61.2
Sample D Male 63.9
Superior colliculi
nTPM: 68.8
Samples: 4

Max nTPM: 79.9
Min nTPM: 62.0
Sample A Female 62.0
Sample B Female 66.4
Sample C Male 66.8
Sample D Male 79.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.1
Samples: 4

Max nTPM: 45.4
Min nTPM: 38.1
Sample A Male 38.1
Sample B Male 44.6
Sample C Female 40.4
Sample D Female 45.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69526809 Antisense, RP_050421_01_F10, Mouse strain C57BL/6J (56 days, male) 8.2

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