MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:21.0 nTPM
GTEx:6.9 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:0.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.8
2411 Female, age 72, unknown 21.5
1833 Male, age 53, unknown 20.0
2828 Female, age 72, unknown 19.9
1830 Male, age 51, unknown 19.6
1870 Female, age 42, unknown 19.5
1827 Male, age 72, unknown 19.4
2586 Male, age 75, left hemisphere 17.9
2019 Male, age 18, unknown 17.7
2219 Male, age 76, both hemispheres 16.7
2666 Male, age 74, left hemisphere 16.0
Dorsal raphe nucleus
nTPM: 18.9
2750 Male, age 76, both hemispheres 20.5
2016 Female, age 72, unknown 20.4
2047 Male, age 72, unknown 19.0
1828 Male, age 53, unknown 17.7
2298 Female, age 72, unknown 16.7
Inferior colliculus
nTPM: 18.6
2097 Female, age 72, unknown 19.6
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 17.9
1848 Female, age 42, unknown 17.8
Median raphe nucleus
nTPM: 16.3
2220 Male, age 76, midline 16.3
Periaquaductal grey, anterior
nTPM: 18.1
1947 Male, age 18, unknown 19.2
2502 Female, age 75, unknown 18.0
1795 Male, age 51, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 18.7
2850 Male, age 76, both hemispheres 20.6
2464 Female, age 72, unknown 18.4
1831 Male, age 72, unknown 18.2
1840 Male, age 53, unknown 17.8
Periaquaductal grey, lateral
nTPM: 19.7
2140 Male, age 76, both hemispheres 22.4
2272 Male, age 74, both hemispheres 19.5
2053 Male, age 18, unknown 17.1
Pretectal area
nTPM: 18.5
2316 Male, age 76, right hemisphere 21.7
2667 Female, age 75, unknown 20.6
2825 Male, age 18, unknown 20.1
2407 Male, age 75, both hemispheres 19.8
1944 Female, age 72, unknown 19.2
2224 Female, age 72, unknown 18.1
1815 Male, age 53, unknown 18.0
2273 Male, age 74, both hemispheres 17.9
1816 Male, age 51, unknown 16.1
2007 Male, age 72, unknown 16.0
1817 Female, age 42, unknown 15.7
Red nucleus
nTPM: 21.0
2823 Male, age 76, right hemisphere 25.2
1865 Male, age 51, unknown 23.9
1954 Female, age 42, unknown 23.9
2227 Male, age 72, unknown 22.1
1904 Male, age 53, unknown 21.2
2584 Male, age 75, left hemisphere 20.7
2785 Male, age 18, unknown 20.0
2588 Male, age 74, left hemisphere 19.9
2769 Male, age 72, unknown 19.7
2725 Female, age 75, unknown 19.3
2503 Female, age 72, unknown 19.0
1821 Female, age 72, unknown 16.5
Substantia nigra
nTPM: 19.1
2699 Male, age 18, unknown 21.2
2583 Male, age 75, right hemisphere 20.7
2241 Male, age 72, unknown 20.5
2409 Female, age 72, unknown 20.5
1889 Female, age 72, unknown 19.2
2665 Male, age 74, both hemispheres 19.1
1941 Male, age 53, unknown 18.3
1851 Male, age 51, unknown 18.2
2590 Female, age 75, unknown 18.1
1916 Female, age 42, unknown 15.0
Superior colliculus
nTPM: 19.9
1913 Female, age 42, unknown 21.9
1995 Male, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 21.2
2664 Male, age 75, both hemispheres 20.3
2668 Female, age 75, unknown 20.0
2587 Male, age 74, left hemisphere 19.5
2261 Male, age 18, unknown 19.3
2087 Female, age 72, unknown 19.1
1839 Male, age 51, unknown 18.2
1796 Male, age 53, unknown 18.0
Ventral tegmental area
nTPM: 18.0
2021 Male, age 53, unknown 20.9
1942 Male, age 51, unknown 20.5
2410 Female, age 72, unknown 18.2
2223 Female, age 72, unknown 17.1
2218 Male, age 76, both hemispheres 15.9
1915 Female, age 42, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 139

Max nTPM: 15.0
Min nTPM: 2.2
Std nTPM: 2.3
Median nTPM: 6.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 15.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 13.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 12.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 11.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 11.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 10.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 23.1
Min nTPM: 19.6
Sample A Female 22.9
Sample B Female 19.6
Sample C Male 20.7
Sample D Male 23.1
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 33.6
Min nTPM: 15.4
Sample A Female 33.6
Sample B Female 24.5
Sample C Male 17.9
Sample D Male 15.4
Periaqueductal gray
nTPM: 20.3
Samples: 3

Max nTPM: 22.4
Min nTPM: 18.9
Sample B Female 22.4
Sample C Male 18.9
Sample D Male 19.6
Superior colliculi
nTPM: 20.3
Samples: 4

Max nTPM: 22.4
Min nTPM: 19.1
Sample A Female 20.0
Sample B Female 19.1
Sample C Male 22.4
Sample D Male 19.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.3
Sample A Male 0.8
Sample B Male 0.6
Sample C Female 1.1
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70203664 Antisense, RP_050519_02_A11, Mouse strain C57BL/6J (56 days, male) 0.2
71627844 Antisense, RP_050927_03_C11, Mouse strain C57BL/6J (56 days, male) 0.0
Midbrain
Expression energy: 0.2
70203664 Antisense, RP_050519_02_A11, Mouse strain C57BL/6J (56 days, male) 0.2
71627844 Antisense, RP_050927_03_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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