MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA Brain:96.5 nTPM
GTEx:64.5 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:56.5 nTPM
Mouse:29.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 96.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.7
2666 Male, age 74, left hemisphere 131.4
2828 Female, age 72, unknown 105.5
2586 Male, age 75, left hemisphere 105.4
1870 Female, age 42, unknown 90.2
1833 Male, age 53, unknown 88.9
1830 Male, age 51, unknown 87.5
1827 Male, age 72, unknown 83.0
2411 Female, age 72, unknown 81.5
2019 Male, age 18, unknown 75.9
2219 Male, age 76, both hemispheres 68.0
Dorsal raphe nucleus
nTPM: 80.4
2016 Female, age 72, unknown 91.6
1828 Male, age 53, unknown 84.2
2750 Male, age 76, both hemispheres 81.0
2047 Male, age 72, unknown 76.1
2298 Female, age 72, unknown 69.4
Inferior colliculus
nTPM: 77.4
2849 Male, age 72, unknown 96.2
1848 Female, age 42, unknown 77.4
1890 Male, age 53, unknown 75.3
2097 Female, age 72, unknown 60.8
Median raphe nucleus
nTPM: 78.0
2220 Male, age 76, midline 78.0
Periaquaductal grey, anterior
nTPM: 86.4
2502 Female, age 75, unknown 94.4
1947 Male, age 18, unknown 85.7
1795 Male, age 51, unknown 79.1
Periaquaductal grey, dorsal
nTPM: 92.2
2850 Male, age 76, both hemispheres 100.8
1840 Male, age 53, unknown 96.5
1831 Male, age 72, unknown 89.8
2464 Female, age 72, unknown 81.7
Periaquaductal grey, lateral
nTPM: 82.4
2053 Male, age 18, unknown 93.7
2140 Male, age 76, both hemispheres 87.8
2272 Male, age 74, both hemispheres 65.6
Pretectal area
nTPM: 79.4
2825 Male, age 18, unknown 96.0
1815 Male, age 53, unknown 87.4
2407 Male, age 75, both hemispheres 87.2
2316 Male, age 76, right hemisphere 80.6
1817 Female, age 42, unknown 78.1
2667 Female, age 75, unknown 77.3
2224 Female, age 72, unknown 77.2
1816 Male, age 51, unknown 76.9
2007 Male, age 72, unknown 72.7
1944 Female, age 72, unknown 70.1
2273 Male, age 74, both hemispheres 69.6
Red nucleus
nTPM: 96.5
2588 Male, age 74, left hemisphere 119.5
2503 Female, age 72, unknown 111.5
2725 Female, age 75, unknown 99.7
1821 Female, age 72, unknown 99.0
2584 Male, age 75, left hemisphere 96.5
1865 Male, age 51, unknown 96.1
1904 Male, age 53, unknown 95.0
2769 Male, age 72, unknown 91.7
2823 Male, age 76, right hemisphere 90.8
2227 Male, age 72, unknown 90.6
1954 Female, age 42, unknown 89.8
2785 Male, age 18, unknown 77.4
Substantia nigra
nTPM: 89.5
2699 Male, age 18, unknown 111.9
2665 Male, age 74, both hemispheres 101.1
1851 Male, age 51, unknown 94.6
2241 Male, age 72, unknown 88.9
2583 Male, age 75, right hemisphere 85.5
2409 Female, age 72, unknown 83.1
2590 Female, age 75, unknown 83.1
1916 Female, age 42, unknown 82.8
1941 Male, age 53, unknown 82.5
1889 Female, age 72, unknown 81.0
Superior colliculus
nTPM: 86.8
2664 Male, age 75, both hemispheres 103.2
2587 Male, age 74, left hemisphere 98.2
1995 Male, age 72, unknown 96.6
1913 Female, age 42, unknown 94.3
1839 Male, age 51, unknown 94.0
2668 Female, age 75, unknown 82.8
1895 Male, age 76, right hemisphere 77.2
1796 Male, age 53, unknown 76.7
2087 Female, age 72, unknown 72.8
2261 Male, age 18, unknown 72.6
Ventral tegmental area
nTPM: 83.3
2410 Female, age 72, unknown 88.2
2021 Male, age 53, unknown 86.0
1915 Female, age 42, unknown 85.0
2223 Female, age 72, unknown 82.8
1942 Male, age 51, unknown 82.6
2218 Male, age 76, both hemispheres 75.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 156.6
Min nTPM: 16.0
Std nTPM: 25.7
Median nTPM: 60.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 156.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 137.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 123.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 121.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 121.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 119.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 117.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 116.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 112.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 107.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 107.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.3
FF:10158-103A5 76 years, female 98.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 56.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.5
Samples: 4

Max nTPM: 64.0
Min nTPM: 48.7
Sample A Female 58.2
Sample B Female 48.7
Sample C Male 64.0
Sample D Male 54.9
Midbrain
nTPM: 50.9
Samples: 4

Max nTPM: 64.8
Min nTPM: 45.0
Sample A Female 64.8
Sample B Female 48.8
Sample C Male 45.0
Sample D Male 45.1
Periaqueductal gray
nTPM: 52.0
Samples: 3

Max nTPM: 57.6
Min nTPM: 48.5
Sample B Female 48.5
Sample C Male 57.6
Sample D Male 50.0
Superior colliculi
nTPM: 48.7
Samples: 4

Max nTPM: 55.5
Min nTPM: 41.6
Sample A Female 50.9
Sample B Female 41.6
Sample C Male 46.8
Sample D Male 55.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 30.7
Min nTPM: 27.2
Sample A Male 27.2
Sample B Male 29.1
Sample C Female 30.6
Sample D Female 30.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69540387 Antisense, RP_050426_01_F09, Mouse strain C57BL/6J (56 days, male) 0.3

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