MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1102.9 nTPM
HPA Brain:693.2 nTPM
GTEx:1102.9 nTPM
FANTOM5:492.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 693.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 532.0
2666 Male, age 74, left hemisphere 616.9
1830 Male, age 51, unknown 607.4
1833 Male, age 53, unknown 597.4
2411 Female, age 72, unknown 595.7
1870 Female, age 42, unknown 560.1
2019 Male, age 18, unknown 555.7
2828 Female, age 72, unknown 495.0
2586 Male, age 75, left hemisphere 485.1
1827 Male, age 72, unknown 405.8
2219 Male, age 76, both hemispheres 400.6
Dorsal raphe nucleus
nTPM: 331.8
2750 Male, age 76, both hemispheres 504.1
2016 Female, age 72, unknown 373.0
1828 Male, age 53, unknown 352.3
2047 Male, age 72, unknown 228.4
2298 Female, age 72, unknown 201.5
Inferior colliculus
nTPM: 347.5
1848 Female, age 42, unknown 402.0
2849 Male, age 72, unknown 398.1
1890 Male, age 53, unknown 344.2
2097 Female, age 72, unknown 245.6
Median raphe nucleus
nTPM: 220.3
2220 Male, age 76, midline 220.3
Periaquaductal grey, anterior
nTPM: 316.7
1947 Male, age 18, unknown 356.2
2502 Female, age 75, unknown 335.8
1795 Male, age 51, unknown 258.0
Periaquaductal grey, dorsal
nTPM: 251.7
2464 Female, age 72, unknown 381.0
1831 Male, age 72, unknown 267.0
1840 Male, age 53, unknown 181.9
2850 Male, age 76, both hemispheres 177.0
Periaquaductal grey, lateral
nTPM: 231.6
2053 Male, age 18, unknown 298.0
2272 Male, age 74, both hemispheres 250.3
2140 Male, age 76, both hemispheres 146.6
Pretectal area
nTPM: 378.0
1815 Male, age 53, unknown 537.3
1817 Female, age 42, unknown 479.2
2316 Male, age 76, right hemisphere 451.8
2007 Male, age 72, unknown 446.9
2407 Male, age 75, both hemispheres 392.4
2667 Female, age 75, unknown 372.0
2825 Male, age 18, unknown 334.5
1816 Male, age 51, unknown 326.6
1944 Female, age 72, unknown 325.0
2273 Male, age 74, both hemispheres 254.2
2224 Female, age 72, unknown 238.4
Red nucleus
nTPM: 693.2
2503 Female, age 72, unknown 828.2
2588 Male, age 74, left hemisphere 795.1
1865 Male, age 51, unknown 789.0
1904 Male, age 53, unknown 775.6
2823 Male, age 76, right hemisphere 740.6
1821 Female, age 72, unknown 737.9
2769 Male, age 72, unknown 690.0
2227 Male, age 72, unknown 685.8
2785 Male, age 18, unknown 673.0
1954 Female, age 42, unknown 619.5
2725 Female, age 75, unknown 511.3
2584 Male, age 75, left hemisphere 473.0
Substantia nigra
nTPM: 403.5
2409 Female, age 72, unknown 543.5
1889 Female, age 72, unknown 505.2
2590 Female, age 75, unknown 421.9
1851 Male, age 51, unknown 421.1
2583 Male, age 75, right hemisphere 416.5
1941 Male, age 53, unknown 403.7
2665 Male, age 74, both hemispheres 398.4
2699 Male, age 18, unknown 355.8
2241 Male, age 72, unknown 298.8
1916 Female, age 42, unknown 269.7
Superior colliculus
nTPM: 472.6
1995 Male, age 72, unknown 675.1
1913 Female, age 42, unknown 564.5
1895 Male, age 76, right hemisphere 556.0
2587 Male, age 74, left hemisphere 533.5
2668 Female, age 75, unknown 530.9
1839 Male, age 51, unknown 479.7
2261 Male, age 18, unknown 353.8
2664 Male, age 75, both hemispheres 353.2
1796 Male, age 53, unknown 340.7
2087 Female, age 72, unknown 338.2
Ventral tegmental area
nTPM: 369.2
2410 Female, age 72, unknown 563.1
2223 Female, age 72, unknown 424.3
1915 Female, age 42, unknown 343.7
1942 Male, age 51, unknown 329.2
2021 Male, age 53, unknown 290.4
2218 Male, age 76, both hemispheres 264.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1102.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1102.9
Samples: 139

Max nTPM: 3684.4
Min nTPM: 347.4
Std nTPM: 653.6
Median nTPM: 943.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3684.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3308.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3220.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 3216.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3100.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3044.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2769.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2315.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2295.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2246.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2211.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 492.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 492.8
FF:10158-103A5 76 years, female 492.8

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