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CDK5RAP3
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  • CDK5RAP3
PROTEIN SUMMARY SECTION OVERVIEW GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CDK5RAP3
Synonyms C53, FLJ13660, HSF-27, IC53, LZAP, MST016, OK/SW-cl.114
Gene descriptioni

Full gene name according to HGNC.

CDK5 regulatory subunit associated protein 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 17
Cytoband q21.32
Chromosome location (bp) 47967810 - 47981781
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

7
Ensembl ENSG00000108465 (version 109)
Entrez gene 80279
HGNC HGNC:18673
UniProt Q96JB5 (UniProt - Evidence at protein level)
neXtProt NX_Q96JB5
GeneCards CDK5RAP3
Antibodypedia CDK5RAP3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Substrate adapter for ufmylation, the covalent attachment of the ubiquitin-like modifier UFM1 to substrate proteins, in response to endoplasmic reticulum stress 1, 2. Negatively regulates NF-kappa-B-mediated gene transcription through the control of RELA phosphorylation 3, 4. Probable tumor suppressor initially identified as a CDK5R1 interactor controlling cell proliferation 5, 6. Also regulates mitotic G2/M transition checkpoint and mitotic G2 DNA damage checkpoint 7, 8. Through its interaction with CDKN2A/ARF and MDM2 may induce MDM2-dependent p53/TP53 ubiquitination, stabilization and activation in the nucleus, thereby promoting G1 cell cycle arrest and inhibition of cell proliferation 9. May also play a role in the rupture of the nuclear envelope during apoptosis 10. May regulate MAPK14 activity by regulating its dephosphorylation by PPM1D/WIP1 11. Required for liver development (By similarity).... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Host-virus interaction
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a protein that has been reported to function in signaling pathways governing transcriptional regulation and cell cycle progression. It may play a role in tumorigenesis and metastasis. A pseudogene of this gene is located on the long arm of chromosome 20. Alternative splicing results in multiple transcript variants that encode different isoforms. [provided by RefSeq, May 2013]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CDK5RAP3-201
ENSP00000344683
ENST00000338399
Q96JB5
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000079 [regulation of cyclin-dependent protein serine/threonine kinase activity]
GO:0001889 [liver development]
GO:0001933 [negative regulation of protein phosphorylation]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0007095 [mitotic G2 DNA damage checkpoint signaling]
GO:0007346 [regulation of mitotic cell cycle]
GO:0007420 [brain development]
GO:0008283 [cell population proliferation]
GO:0010921 [regulation of phosphatase activity]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030262 [apoptotic nuclear changes]
GO:0030332 [cyclin binding]
GO:0030968 [endoplasmic reticulum unfolded protein response]
GO:0031398 [positive regulation of protein ubiquitination]
GO:0032088 [negative regulation of NF-kappaB transcription factor activity]
GO:0032991 [protein-containing complex]
GO:0034976 [response to endoplasmic reticulum stress]
GO:0042177 [negative regulation of protein catabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0043407 [negative regulation of MAP kinase activity]
GO:0044387 [negative regulation of protein kinase activity by regulation of protein phosphorylation]
GO:0044389 [ubiquitin-like protein ligase binding]
GO:0044818 [mitotic G2/M transition checkpoint]
GO:0045664 [regulation of neuron differentiation]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0051019 [mitogen-activated protein kinase binding]
GO:0051059 [NF-kappaB binding]
GO:0060318 [definitive erythrocyte differentiation]
GO:0071569 [protein ufmylation]
GO:0071901 [negative regulation of protein serine/threonine kinase activity]
GO:0097371 [MDM2/MDM4 family protein binding]
GO:1900182 [positive regulation of protein localization to nucleus]
GO:1901798 [positive regulation of signal transduction by p53 class mediator]
Show all
506 aa
56.9 kDa
No 0
CDK5RAP3-202
ENSP00000438886
ENST00000536708
Q96JB5
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000079 [regulation of cyclin-dependent protein serine/threonine kinase activity]
GO:0001889 [liver development]
GO:0001933 [negative regulation of protein phosphorylation]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0005813 [centrosome]
GO:0005815 [microtubule organizing center]
GO:0005829 [cytosol]
GO:0005856 [cytoskeleton]
GO:0005874 [microtubule]
GO:0007095 [mitotic G2 DNA damage checkpoint signaling]
GO:0007346 [regulation of mitotic cell cycle]
GO:0007420 [brain development]
GO:0008283 [cell population proliferation]
GO:0010921 [regulation of phosphatase activity]
GO:0016020 [membrane]
GO:0019901 [protein kinase binding]
GO:0030262 [apoptotic nuclear changes]
GO:0030332 [cyclin binding]
GO:0030968 [endoplasmic reticulum unfolded protein response]
GO:0031398 [positive regulation of protein ubiquitination]
GO:0032088 [negative regulation of NF-kappaB transcription factor activity]
GO:0032991 [protein-containing complex]
GO:0034976 [response to endoplasmic reticulum stress]
GO:0042177 [negative regulation of protein catabolic process]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0043407 [negative regulation of MAP kinase activity]
GO:0044387 [negative regulation of protein kinase activity by regulation of protein phosphorylation]
GO:0044389 [ubiquitin-like protein ligase binding]
GO:0044818 [mitotic G2/M transition checkpoint]
GO:0045664 [regulation of neuron differentiation]
GO:0051019 [mitogen-activated protein kinase binding]
GO:0051059 [NF-kappaB binding]
GO:0060318 [definitive erythrocyte differentiation]
GO:0071569 [protein ufmylation]
GO:0071901 [negative regulation of protein serine/threonine kinase activity]
GO:0097371 [MDM2/MDM4 family protein binding]
GO:1900182 [positive regulation of protein localization to nucleus]
GO:1901798 [positive regulation of signal transduction by p53 class mediator]
Show all
531 aa
59.6 kDa
No 0
CDK5RAP3-206
ENSP00000462886
ENST00000578018
J3KTA5
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
64 aa
7.6 kDa
No 0
CDK5RAP3-212
ENSP00000463950
ENST00000579175
J3QQY1
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
281 aa
32 kDa
No 0
CDK5RAP3-214
ENSP00000464542
ENST00000579632
J3QS62
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
196 aa
22.8 kDa
No 0
CDK5RAP3-227
ENSP00000463431
ENST00000583352
J3QL86
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
123 aa
13.9 kDa
No 0
CDK5RAP3-229
ENSP00000464286
ENST00000583697
J3QRM1
[Direct mapping] CDK5 regulatory subunit-associated protein 3
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005730 [nucleolus]
GO:0005829 [cytosol]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
272 aa
30.1 kDa
No 0

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