HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.1 nTPM
HPA Brain:109.6 nTPM
GTEx:38.1 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:99.2 nTPM
Mouse:140.8 nTPM
Allen mouse:10.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 109.6
Sample id Sample description nTPM
Hippocampus
nTPM: 104.3
2621 Female, age 67, right hemisphere 146.5
2148 Female, age 91, left hemisphere 105.9
1911 Female, age 85, right hemisphere 104.6
1898 Male, age 80, left hemisphere 91.1
1855 Male, age 76, left hemisphere 90.1
2529 Female, age 94, left hemisphere 87.6
Dentate gyrus
nTPM: 92.7
1927 Female, age 91, both hemispheres 116.9
2530 Female, age 94, left hemisphere 106.6
2531 Female, age 67, both hemispheres 101.2
2246 Female, age 85, both hemispheres 78.2
2528 Male, age 74, both hemispheres 76.7
2010 Male, age 76, both hemispheres 76.5
Entorhinal gyrus
nTPM: 84.4
2613 Female, age 94, left hemisphere 122.4
2764 Male, age 80, right hemisphere 85.0
1787 Male, age 76, left hemisphere 82.9
1938 Female, age 85, left hemisphere 79.2
2686 Male, age 75, right hemisphere 77.9
2117 Female, age 91, right hemisphere 58.7
Hippocampus, CA1
nTPM: 100.2
2749 Male, age 80, left hemisphere 165.6
2527 Male, age 74, both hemispheres 109.3
1873 Female, age 85, both hemispheres 87.7
2082 Female, age 91, right hemisphere 74.4
2045 Male, age 76, both hemispheres 64.0
Hippocampus, CA2
nTPM: 94.3
1963 Male, age 80, left hemisphere 130.0
1892 Male, age 76, both hemispheres 105.2
2437 Female, age 94, left hemisphere 91.8
2113 Female, age 91, right hemisphere 84.7
2249 Male, age 74, both hemispheres 82.5
1940 Female, age 85, left hemisphere 71.5
Hippocampus, CA3
nTPM: 109.6
2137 Male, age 80, left hemisphere 175.0
2861 Female, age 67, both hemispheres 128.9
2620 Female, age 94, left hemisphere 127.2
2436 Male, age 74, both hemispheres 80.5
1867 Male, age 76, both hemispheres 80.1
1891 Female, age 85, both hemispheres 66.0
Parahippocampal cortex
nTPM: 88.6
2245 Female, age 91, both hemispheres 135.0
2622 Female, age 67, right hemisphere 108.1
2693 Female, age 94, both hemispheres 91.4
2532 Female, age 72, left hemisphere 87.5
1850 Male, age 80, both hemispheres 83.8
2250 Female, age 67, right hemisphere 80.1
1990 Female, age 91, right hemisphere 78.4
2692 Male, age 74, both hemispheres 76.5
1933 Female, age 85, both hemispheres 76.1
2018 Male, age 76, both hemispheres 69.3
Perirhinal gyrus
nTPM: 90.8
2521 Female, age 94, right hemisphere 101.9
1847 Female, age 91, left hemisphere 95.9
1794 Male, age 80, right hemisphere 95.8
1841 Female, age 85, right hemisphere 84.7
2848 Male, age 76, right hemisphere 75.5
Subiculum
nTPM: 74.3
1901 Male, age 80, both hemispheres 88.7
2042 Male, age 76, both hemispheres 78.6
2619 Male, age 74, both hemispheres 76.7
2438 Female, age 94, left hemisphere 71.7
1977 Female, age 85, both hemispheres 71.5
2729 Female, age 91, right hemisphere 58.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.1
Samples: 197

Max nTPM: 138.1
Min nTPM: 7.6
Std nTPM: 22.7
Median nTPM: 33.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 138.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 112.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 101.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 100.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 90.5
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 90.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 84.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 83.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 81.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 80.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 79.2
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.6
FF:10169-103B7 60 years, female 110.0
FF:10153-102I9 76 years, female 79.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 99.2
Pig sample Sample description nTPM
Subiculum
nTPM: 68.0
Samples: 4

Max nTPM: 87.4
Min nTPM: 56.2
Sample A Female 87.4
Sample B Female 56.2
Sample C Male 67.6
Sample D Male 60.9
Dorsal hippocampus
nTPM: 70.9
Samples: 4

Max nTPM: 85.6
Min nTPM: 59.5
Sample A Female 85.6
Sample B Female 74.7
Sample C Male 59.5
Sample D Male 63.9
Entorhinal cortex
nTPM: 99.2
Samples: 4

Max nTPM: 115.2
Min nTPM: 81.8
Sample A Female 115.2
Sample B Female 81.8
Sample C Male 106.5
Sample D Male 93.3
Ventral hippocampus
nTPM: 67.6
Samples: 4

Max nTPM: 90.8
Min nTPM: 45.9
Sample A Female 56.2
Sample B Female 45.9
Sample C Male 77.6
Sample D Male 90.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 140.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 85.2
Samples: 4

Max nTPM: 90.7
Min nTPM: 81.2
Sample A Male 90.7
Sample B Male 81.2
Sample C Female 84.5
Sample D Female 84.4
Hippocampal formation
nTPM: 140.8
Samples: 4

Max nTPM: 174.3
Min nTPM: 115.1
Sample A Male 115.1
Sample B Male 146.1
Sample C Female 174.3
Sample D Female 127.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.2
69540339 Antisense, RP_050426_01_E09, Mouse strain C57BL/6J (56 days, male) 10.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org