MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:29.9 nTPM
GTEx:9.8 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:25.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.0
2586 Male, age 75, left hemisphere 36.2
2666 Male, age 74, left hemisphere 28.3
2019 Male, age 18, unknown 28.1
1870 Female, age 42, unknown 27.7
1833 Male, age 53, unknown 27.3
2411 Female, age 72, unknown 27.0
1827 Male, age 72, unknown 26.9
1830 Male, age 51, unknown 26.9
2828 Female, age 72, unknown 26.3
2219 Male, age 76, both hemispheres 25.5
Dorsal raphe nucleus
nTPM: 25.5
2750 Male, age 76, both hemispheres 26.9
1828 Male, age 53, unknown 26.6
2016 Female, age 72, unknown 25.7
2047 Male, age 72, unknown 25.0
2298 Female, age 72, unknown 23.1
Inferior colliculus
nTPM: 27.5
1890 Male, age 53, unknown 29.1
2849 Male, age 72, unknown 27.8
1848 Female, age 42, unknown 27.7
2097 Female, age 72, unknown 25.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 28.7
2502 Female, age 75, unknown 32.2
1947 Male, age 18, unknown 28.3
1795 Male, age 51, unknown 25.7
Periaquaductal grey, dorsal
nTPM: 27.4
2850 Male, age 76, both hemispheres 29.1
1840 Male, age 53, unknown 29.0
2464 Female, age 72, unknown 26.3
1831 Male, age 72, unknown 25.3
Periaquaductal grey, lateral
nTPM: 26.9
2140 Male, age 76, both hemispheres 31.4
2053 Male, age 18, unknown 25.7
2272 Male, age 74, both hemispheres 23.5
Pretectal area
nTPM: 26.9
1817 Female, age 42, unknown 30.2
2407 Male, age 75, both hemispheres 28.9
1944 Female, age 72, unknown 28.1
2007 Male, age 72, unknown 28.1
1816 Male, age 51, unknown 28.0
2825 Male, age 18, unknown 26.9
2667 Female, age 75, unknown 26.7
1815 Male, age 53, unknown 26.5
2316 Male, age 76, right hemisphere 26.3
2224 Female, age 72, unknown 23.5
2273 Male, age 74, both hemispheres 22.8
Red nucleus
nTPM: 27.3
2584 Male, age 75, left hemisphere 31.7
2588 Male, age 74, left hemisphere 28.7
1865 Male, age 51, unknown 27.8
2725 Female, age 75, unknown 27.8
1821 Female, age 72, unknown 27.5
2769 Male, age 72, unknown 27.5
1954 Female, age 42, unknown 26.5
2785 Male, age 18, unknown 26.5
2823 Male, age 76, right hemisphere 26.5
1904 Male, age 53, unknown 26.1
2227 Male, age 72, unknown 25.9
2503 Female, age 72, unknown 24.9
Substantia nigra
nTPM: 28.8
2241 Male, age 72, unknown 32.6
2699 Male, age 18, unknown 31.9
1851 Male, age 51, unknown 30.1
1916 Female, age 42, unknown 29.9
2665 Male, age 74, both hemispheres 29.5
2583 Male, age 75, right hemisphere 28.2
1889 Female, age 72, unknown 27.6
1941 Male, age 53, unknown 27.4
2409 Female, age 72, unknown 25.8
2590 Female, age 75, unknown 25.3
Superior colliculus
nTPM: 27.3
2664 Male, age 75, both hemispheres 33.0
1839 Male, age 51, unknown 27.6
1895 Male, age 76, right hemisphere 27.4
1796 Male, age 53, unknown 27.3
2668 Female, age 75, unknown 27.2
2087 Female, age 72, unknown 27.1
1995 Male, age 72, unknown 27.0
1913 Female, age 42, unknown 26.3
2261 Male, age 18, unknown 26.1
2587 Male, age 74, left hemisphere 24.0
Ventral tegmental area
nTPM: 27.3
2218 Male, age 76, both hemispheres 28.3
1942 Male, age 51, unknown 28.0
1915 Female, age 42, unknown 27.6
2223 Female, age 72, unknown 26.9
2410 Female, age 72, unknown 26.6
2021 Male, age 53, unknown 26.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 16.2
Min nTPM: 5.9
Std nTPM: 1.6
Median nTPM: 9.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 16.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 14.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 13.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 13.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 12.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 12.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 12.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 12.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 12.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 12.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.9
Samples: 4

Max nTPM: 48.2
Min nTPM: 39.6
Sample A Female 48.2
Sample B Female 39.6
Sample C Male 43.3
Sample D Male 44.3
Midbrain
nTPM: 44.8
Samples: 4

Max nTPM: 51.2
Min nTPM: 39.8
Sample A Female 51.2
Sample B Female 47.1
Sample C Male 39.8
Sample D Male 41.1
Periaqueductal gray
nTPM: 42.5
Samples: 3

Max nTPM: 44.8
Min nTPM: 40.3
Sample B Female 44.8
Sample C Male 40.3
Sample D Male 42.3
Superior colliculi
nTPM: 39.7
Samples: 4

Max nTPM: 42.4
Min nTPM: 32.8
Sample A Female 42.4
Sample B Female 32.8
Sample C Male 41.6
Sample D Male 42.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 26.3
Min nTPM: 23.7
Sample A Male 23.7
Sample B Male 24.8
Sample C Female 26.3
Sample D Female 25.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100144152 Antisense, RP_110421_01_B06, Mouse strain C57BL/6J (56 days, male) 0.1

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