MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.6 nTPM
HPA Brain:88.3 nTPM
GTEx:75.6 nTPM
FANTOM5:109.5 Scaled Tags Per Million
Pig:117.4 nTPM
Mouse:15.5 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 88.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.0
2411 Female, age 72, unknown 90.7
2019 Male, age 18, unknown 90.3
1870 Female, age 42, unknown 89.9
1830 Male, age 51, unknown 88.7
1833 Male, age 53, unknown 81.9
2828 Female, age 72, unknown 66.5
2666 Male, age 74, left hemisphere 55.5
1827 Male, age 72, unknown 49.0
2586 Male, age 75, left hemisphere 38.7
2219 Male, age 76, both hemispheres 38.3
Dorsal raphe nucleus
nTPM: 52.4
2750 Male, age 76, both hemispheres 80.3
2016 Female, age 72, unknown 56.7
1828 Male, age 53, unknown 52.1
2298 Female, age 72, unknown 38.2
2047 Male, age 72, unknown 34.9
Inferior colliculus
nTPM: 47.0
1890 Male, age 53, unknown 52.2
1848 Female, age 42, unknown 49.6
2097 Female, age 72, unknown 43.7
2849 Male, age 72, unknown 42.6
Median raphe nucleus
nTPM: 46.5
2220 Male, age 76, midline 46.5
Periaquaductal grey, anterior
nTPM: 45.6
2502 Female, age 75, unknown 53.2
1947 Male, age 18, unknown 45.1
1795 Male, age 51, unknown 38.5
Periaquaductal grey, dorsal
nTPM: 39.4
2464 Female, age 72, unknown 51.0
1831 Male, age 72, unknown 43.5
2850 Male, age 76, both hemispheres 41.6
1840 Male, age 53, unknown 21.4
Periaquaductal grey, lateral
nTPM: 47.6
2272 Male, age 74, both hemispheres 56.0
2053 Male, age 18, unknown 45.3
2140 Male, age 76, both hemispheres 41.6
Pretectal area
nTPM: 47.1
2316 Male, age 76, right hemisphere 67.9
1815 Male, age 53, unknown 61.0
2407 Male, age 75, both hemispheres 55.2
1817 Female, age 42, unknown 53.0
2273 Male, age 74, both hemispheres 49.0
2007 Male, age 72, unknown 46.4
2825 Male, age 18, unknown 45.3
2667 Female, age 75, unknown 44.1
2224 Female, age 72, unknown 39.6
1944 Female, age 72, unknown 29.6
1816 Male, age 51, unknown 26.8
Red nucleus
nTPM: 88.3
1904 Male, age 53, unknown 109.4
1865 Male, age 51, unknown 104.9
2769 Male, age 72, unknown 102.5
2227 Male, age 72, unknown 101.0
2785 Male, age 18, unknown 98.8
1821 Female, age 72, unknown 97.2
1954 Female, age 42, unknown 89.6
2823 Male, age 76, right hemisphere 86.2
2503 Female, age 72, unknown 80.3
2588 Male, age 74, left hemisphere 64.8
2725 Female, age 75, unknown 64.8
2584 Male, age 75, left hemisphere 59.5
Substantia nigra
nTPM: 51.1
1851 Male, age 51, unknown 62.3
2590 Female, age 75, unknown 61.5
2409 Female, age 72, unknown 55.7
2583 Male, age 75, right hemisphere 55.2
1889 Female, age 72, unknown 51.9
2699 Male, age 18, unknown 50.6
2665 Male, age 74, both hemispheres 49.2
1941 Male, age 53, unknown 44.6
1916 Female, age 42, unknown 41.7
2241 Male, age 72, unknown 38.1
Superior colliculus
nTPM: 56.8
1913 Female, age 42, unknown 93.5
1995 Male, age 72, unknown 90.9
2587 Male, age 74, left hemisphere 66.0
1839 Male, age 51, unknown 60.2
1895 Male, age 76, right hemisphere 51.6
2668 Female, age 75, unknown 51.6
1796 Male, age 53, unknown 48.9
2087 Female, age 72, unknown 36.7
2261 Male, age 18, unknown 35.6
2664 Male, age 75, both hemispheres 32.9
Ventral tegmental area
nTPM: 63.8
2223 Female, age 72, unknown 89.9
2410 Female, age 72, unknown 75.9
2218 Male, age 76, both hemispheres 58.5
2021 Male, age 53, unknown 54.6
1942 Male, age 51, unknown 54.1
1915 Female, age 42, unknown 50.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 75.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.6
Samples: 139

Max nTPM: 278.0
Min nTPM: 23.1
Std nTPM: 36.7
Median nTPM: 68.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 278.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 219.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 200.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 162.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 151.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 150.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 137.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 132.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 126.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 126.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 125.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.5
FF:10158-103A5 76 years, female 109.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 117.5
Samples: 4

Max nTPM: 164.0
Min nTPM: 85.3
Sample A Female 123.0
Sample B Female 85.3
Sample C Male 97.5
Sample D Male 164.0
Midbrain
nTPM: 111.6
Samples: 4

Max nTPM: 233.8
Min nTPM: 50.5
Sample A Female 233.8
Sample B Female 103.6
Sample C Male 50.5
Sample D Male 58.4
Periaqueductal gray
nTPM: 87.9
Samples: 3

Max nTPM: 92.6
Min nTPM: 84.6
Sample B Female 86.5
Sample C Male 84.6
Sample D Male 92.6
Superior colliculi
nTPM: 87.1
Samples: 4

Max nTPM: 113.7
Min nTPM: 60.7
Sample A Female 113.7
Sample B Female 60.7
Sample C Male 74.2
Sample D Male 99.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.0
Sample A Male 17.1
Sample B Male 13.0
Sample C Female 16.3
Sample D Female 15.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
72731 Antisense, RP_040407_01_B03, Mouse strain C57BL/6J (56 days, male) 4.5

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