HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		18.735
RNA expressioni
Consensus:10.0 nTPM
HPA Brain:16.1 nTPM
GTEx:10.0 nTPM
FANTOM5:16.0 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:37.1 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004061Antibody HPA075333
Glial cells Not detectedLow
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA004061
Hippocampal formation mean intensity 18.735
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 1.309
Molecular layer of the dentate gyrus 0.300
Granular dentate gyrus 11.044
CA1 - oriens layer 0.358
CA1 - pyramidal layer 10.951
CA1 - radiatum layer 0.372
CA2 - oriens layer 0.479
CA2 - pyramidal layer 2.310
CA2 - radiatum layer 0.231
CA3 - oriens layer 0.351
CA3 - pyramidal layer 5.879
CA3 - radiatum layer 0.390
Stratum lucidum 0.578
Lacunosum moleculare 0.392
Subiculum 0.495

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Hippocampus
nTPM: 12.9
1898 Male, age 80, left hemisphere 14.9
2148 Female, age 91, left hemisphere 14.3
2529 Female, age 94, left hemisphere 13.0
1855 Male, age 76, left hemisphere 12.0
1911 Female, age 85, right hemisphere 11.7
2621 Female, age 67, right hemisphere 11.7
Dentate gyrus
nTPM: 13.1
1927 Female, age 91, both hemispheres 16.0
2531 Female, age 67, both hemispheres 15.2
2528 Male, age 74, both hemispheres 13.5
2246 Female, age 85, both hemispheres 12.5
2530 Female, age 94, left hemisphere 11.1
2010 Male, age 76, both hemispheres 10.1
Entorhinal gyrus
nTPM: 15.7
2613 Female, age 94, left hemisphere 17.4
1938 Female, age 85, left hemisphere 17.3
2764 Male, age 80, right hemisphere 16.9
1787 Male, age 76, left hemisphere 15.0
2117 Female, age 91, right hemisphere 13.9
2686 Male, age 75, right hemisphere 13.4
Hippocampus, CA1
nTPM: 13.3
2749 Male, age 80, left hemisphere 14.0
2082 Female, age 91, right hemisphere 13.7
1873 Female, age 85, both hemispheres 13.5
2527 Male, age 74, both hemispheres 13.5
2045 Male, age 76, both hemispheres 11.9
Hippocampus, CA2
nTPM: 14.5
1892 Male, age 76, both hemispheres 17.1
2437 Female, age 94, left hemisphere 15.5
2249 Male, age 74, both hemispheres 14.1
1963 Male, age 80, left hemisphere 13.6
2113 Female, age 91, right hemisphere 13.5
1940 Female, age 85, left hemisphere 13.3
Hippocampus, CA3
nTPM: 15.6
2620 Female, age 94, left hemisphere 22.3
2436 Male, age 74, both hemispheres 16.0
1891 Female, age 85, both hemispheres 14.6
1867 Male, age 76, both hemispheres 14.0
2137 Male, age 80, left hemisphere 13.7
2861 Female, age 67, both hemispheres 12.9
Parahippocampal cortex
nTPM: 14.5
1850 Male, age 80, both hemispheres 16.9
2693 Female, age 94, both hemispheres 16.0
2622 Female, age 67, right hemisphere 15.1
1933 Female, age 85, both hemispheres 15.0
1990 Female, age 91, right hemisphere 14.8
2692 Male, age 74, both hemispheres 14.5
2245 Female, age 91, both hemispheres 14.4
2250 Female, age 67, right hemisphere 14.0
2532 Female, age 72, left hemisphere 12.2
2018 Male, age 76, both hemispheres 11.7
Perirhinal gyrus
nTPM: 16.1
1847 Female, age 91, left hemisphere 19.1
1794 Male, age 80, right hemisphere 16.8
1841 Female, age 85, right hemisphere 16.7
2848 Male, age 76, right hemisphere 14.2
2521 Female, age 94, right hemisphere 13.6
Subiculum
nTPM: 13.2
1977 Female, age 85, both hemispheres 15.4
2619 Male, age 74, both hemispheres 13.8
1901 Male, age 80, both hemispheres 13.7
2438 Female, age 94, left hemisphere 13.5
2729 Female, age 91, right hemisphere 13.4
2042 Male, age 76, both hemispheres 9.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.0
Samples: 197

Max nTPM: 19.7
Min nTPM: 4.7
Std nTPM: 2.5
Median nTPM: 9.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 19.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 19.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 18.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 16.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 16.3
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 15.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 15.4
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 15.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 15.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 14.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 14.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.0
FF:10153-102I9 76 years, female 18.5
FF:10169-103B7 60 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.0
Pig sample Sample description nTPM
Subiculum
nTPM: 20.3
Samples: 4

Max nTPM: 21.7
Min nTPM: 19.1
Sample A Female 21.7
Sample B Female 19.1
Sample C Male 20.4
Sample D Male 20.1
Dorsal hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.6
Sample A Female 18.6
Sample B Female 18.7
Sample C Male 21.7
Sample D Male 20.0
Entorhinal cortex
nTPM: 22.0
Samples: 4

Max nTPM: 22.8
Min nTPM: 21.6
Sample A Female 21.9
Sample B Female 21.8
Sample C Male 22.8
Sample D Male 21.6
Ventral hippocampus
nTPM: 18.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 17.8
Sample A Female 19.5
Sample B Female 18.8
Sample C Male 18.6
Sample D Male 17.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 37.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 35.8
Samples: 4

Max nTPM: 37.5
Min nTPM: 33.2
Sample A Male 37.5
Sample B Male 37.3
Sample C Female 35.0
Sample D Female 33.2
Hippocampal formation
nTPM: 37.1
Samples: 4

Max nTPM: 38.8
Min nTPM: 34.6
Sample A Male 38.8
Sample B Male 38.7
Sample C Female 36.1
Sample D Female 34.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
69013744 Antisense, RP_050309_02_H08, Mouse strain C57BL/6J (56 days, male) 3.0

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