MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:40.5 nTPM
GTEx:14.2 nTPM
FANTOM5:39.4 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:5.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.6
1870 Female, age 42, unknown 35.2
2666 Male, age 74, left hemisphere 34.0
2828 Female, age 72, unknown 32.7
1830 Male, age 51, unknown 32.6
1833 Male, age 53, unknown 32.6
2411 Female, age 72, unknown 32.4
2586 Male, age 75, left hemisphere 32.2
2019 Male, age 18, unknown 31.8
1827 Male, age 72, unknown 28.5
2219 Male, age 76, both hemispheres 24.5
Dorsal raphe nucleus
nTPM: 29.0
2750 Male, age 76, both hemispheres 33.5
2016 Female, age 72, unknown 31.6
1828 Male, age 53, unknown 27.5
2047 Male, age 72, unknown 27.3
2298 Female, age 72, unknown 25.1
Inferior colliculus
nTPM: 24.3
1890 Male, age 53, unknown 28.9
2097 Female, age 72, unknown 23.3
1848 Female, age 42, unknown 22.6
2849 Male, age 72, unknown 22.5
Median raphe nucleus
nTPM: 24.4
2220 Male, age 76, midline 24.4
Periaquaductal grey, anterior
nTPM: 29.1
2502 Female, age 75, unknown 30.6
1795 Male, age 51, unknown 30.0
1947 Male, age 18, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 23.9
2464 Female, age 72, unknown 27.9
1831 Male, age 72, unknown 25.3
1840 Male, age 53, unknown 21.3
2850 Male, age 76, both hemispheres 20.9
Periaquaductal grey, lateral
nTPM: 26.3
2053 Male, age 18, unknown 30.0
2272 Male, age 74, both hemispheres 25.5
2140 Male, age 76, both hemispheres 23.3
Pretectal area
nTPM: 27.7
2316 Male, age 76, right hemisphere 34.6
2667 Female, age 75, unknown 31.0
1815 Male, age 53, unknown 29.1
2007 Male, age 72, unknown 28.5
1817 Female, age 42, unknown 27.9
2273 Male, age 74, both hemispheres 27.1
2825 Male, age 18, unknown 26.5
2224 Female, age 72, unknown 26.3
2407 Male, age 75, both hemispheres 25.0
1944 Female, age 72, unknown 24.7
1816 Male, age 51, unknown 24.0
Red nucleus
nTPM: 40.5
1821 Female, age 72, unknown 43.7
1904 Male, age 53, unknown 43.6
2823 Male, age 76, right hemisphere 42.4
1865 Male, age 51, unknown 42.2
2503 Female, age 72, unknown 41.7
2769 Male, age 72, unknown 41.4
2227 Male, age 72, unknown 40.7
2588 Male, age 74, left hemisphere 40.6
2584 Male, age 75, left hemisphere 39.3
2785 Male, age 18, unknown 38.8
1954 Female, age 42, unknown 36.6
2725 Female, age 75, unknown 34.4
Substantia nigra
nTPM: 32.4
2590 Female, age 75, unknown 36.4
1851 Male, age 51, unknown 36.1
2583 Male, age 75, right hemisphere 35.0
2699 Male, age 18, unknown 34.6
2409 Female, age 72, unknown 33.1
1916 Female, age 42, unknown 32.0
1889 Female, age 72, unknown 31.8
2241 Male, age 72, unknown 29.4
2665 Male, age 74, both hemispheres 28.1
1941 Male, age 53, unknown 27.6
Superior colliculus
nTPM: 29.9
1913 Female, age 42, unknown 44.0
1995 Male, age 72, unknown 35.6
1895 Male, age 76, right hemisphere 29.2
2664 Male, age 75, both hemispheres 28.4
1796 Male, age 53, unknown 27.9
2261 Male, age 18, unknown 27.9
2587 Male, age 74, left hemisphere 27.6
1839 Male, age 51, unknown 27.4
2668 Female, age 75, unknown 25.9
2087 Female, age 72, unknown 25.0
Ventral tegmental area
nTPM: 33.1
2410 Female, age 72, unknown 41.6
2021 Male, age 53, unknown 33.6
1942 Male, age 51, unknown 32.4
1915 Female, age 42, unknown 32.2
2223 Female, age 72, unknown 30.4
2218 Male, age 76, both hemispheres 28.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 22.4
Min nTPM: 5.6
Std nTPM: 3.5
Median nTPM: 14.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 22.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 21.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 21.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 21.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 21.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 21.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 21.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 19.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 19.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 19.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 19.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.4
FF:10158-103A5 76 years, female 39.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.2
Samples: 4

Max nTPM: 9.8
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 9.8
Sample C Male 7.2
Sample D Male 9.2
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.1
Sample A Female 7.2
Sample B Female 8.2
Sample C Male 7.1
Sample D Male 7.2
Periaqueductal gray
nTPM: 7.2
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.7
Sample B Female 8.1
Sample C Male 6.9
Sample D Male 6.7
Superior colliculi
nTPM: 9.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 7.7
Sample A Female 8.0
Sample B Female 12.6
Sample C Male 7.7
Sample D Male 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.0
Sample A Male 6.6
Sample B Male 5.2
Sample C Female 4.0
Sample D Female 5.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68861870 Antisense, RP_050301_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2

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