HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:54.5 nTPM
GTEx:20.6 nTPM
FANTOM5:29.7 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:73.1 nTPM
Allen mouse:13.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA026486Antibody HPA073483
Glial cells Not detectedLow
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.5
Sample id Sample description nTPM
Hippocampus
nTPM: 50.0
1898 Male, age 80, left hemisphere 56.4
1855 Male, age 76, left hemisphere 50.7
1911 Female, age 85, right hemisphere 50.6
2621 Female, age 67, right hemisphere 50.3
2148 Female, age 91, left hemisphere 50.2
2529 Female, age 94, left hemisphere 41.9
Dentate gyrus
nTPM: 53.7
2531 Female, age 67, both hemispheres 64.8
2246 Female, age 85, both hemispheres 55.0
2530 Female, age 94, left hemisphere 52.4
2010 Male, age 76, both hemispheres 52.0
1927 Female, age 91, both hemispheres 49.4
2528 Male, age 74, both hemispheres 48.7
Entorhinal gyrus
nTPM: 53.8
2764 Male, age 80, right hemisphere 63.5
2613 Female, age 94, left hemisphere 56.9
2117 Female, age 91, right hemisphere 53.4
1787 Male, age 76, left hemisphere 51.5
1938 Female, age 85, left hemisphere 49.1
2686 Male, age 75, right hemisphere 48.5
Hippocampus, CA1
nTPM: 51.0
2045 Male, age 76, both hemispheres 56.1
2749 Male, age 80, left hemisphere 55.0
1873 Female, age 85, both hemispheres 50.4
2527 Male, age 74, both hemispheres 49.6
2082 Female, age 91, right hemisphere 43.7
Hippocampus, CA2
nTPM: 48.1
1940 Female, age 85, left hemisphere 52.2
2249 Male, age 74, both hemispheres 49.5
2437 Female, age 94, left hemisphere 49.4
1963 Male, age 80, left hemisphere 48.4
2113 Female, age 91, right hemisphere 46.1
1892 Male, age 76, both hemispheres 43.3
Hippocampus, CA3
nTPM: 54.5
2620 Female, age 94, left hemisphere 86.8
2861 Female, age 67, both hemispheres 55.5
1891 Female, age 85, both hemispheres 52.5
2137 Male, age 80, left hemisphere 45.4
2436 Male, age 74, both hemispheres 44.3
1867 Male, age 76, both hemispheres 42.4
Parahippocampal cortex
nTPM: 49.6
2693 Female, age 94, both hemispheres 58.3
2532 Female, age 72, left hemisphere 56.2
1933 Female, age 85, both hemispheres 51.4
2245 Female, age 91, both hemispheres 50.9
1850 Male, age 80, both hemispheres 49.7
2692 Male, age 74, both hemispheres 48.8
2250 Female, age 67, right hemisphere 45.7
2018 Male, age 76, both hemispheres 45.3
1990 Female, age 91, right hemisphere 45.0
2622 Female, age 67, right hemisphere 44.1
Perirhinal gyrus
nTPM: 54.0
2521 Female, age 94, right hemisphere 63.5
1794 Male, age 80, right hemisphere 58.5
1841 Female, age 85, right hemisphere 50.6
1847 Female, age 91, left hemisphere 49.9
2848 Male, age 76, right hemisphere 47.4
Subiculum
nTPM: 50.6
1977 Female, age 85, both hemispheres 56.8
1901 Male, age 80, both hemispheres 56.6
2042 Male, age 76, both hemispheres 56.1
2729 Female, age 91, right hemisphere 46.2
2619 Male, age 74, both hemispheres 46.1
2438 Female, age 94, left hemisphere 42.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.6
Samples: 197

Max nTPM: 42.4
Min nTPM: 5.0
Std nTPM: 5.4
Median nTPM: 20.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 42.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 37.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 36.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 35.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 34.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 33.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 33.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 32.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 30.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 29.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 29.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 29.7
FF:10169-103B7 60 years, female 30.1
FF:10153-102I9 76 years, female 29.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Subiculum
nTPM: 39.5
Samples: 4

Max nTPM: 51.3
Min nTPM: 31.1
Sample A Female 51.3
Sample B Female 36.4
Sample C Male 39.1
Sample D Male 31.1
Dorsal hippocampus
nTPM: 41.3
Samples: 4

Max nTPM: 52.6
Min nTPM: 26.2
Sample A Female 52.6
Sample B Female 52.4
Sample C Male 26.2
Sample D Male 34.0
Entorhinal cortex
nTPM: 46.4
Samples: 4

Max nTPM: 54.4
Min nTPM: 38.9
Sample A Female 54.4
Sample B Female 38.9
Sample C Male 51.2
Sample D Male 41.0
Ventral hippocampus
nTPM: 42.9
Samples: 4

Max nTPM: 52.8
Min nTPM: 31.6
Sample A Female 38.2
Sample B Female 31.6
Sample C Male 49.0
Sample D Male 52.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 73.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.1
Samples: 4

Max nTPM: 88.6
Min nTPM: 65.9
Sample A Male 65.9
Sample B Male 71.3
Sample C Female 66.6
Sample D Female 88.6
Hippocampal formation
nTPM: 66.7
Samples: 4

Max nTPM: 70.0
Min nTPM: 62.3
Sample A Male 62.3
Sample B Male 69.5
Sample C Female 70.0
Sample D Female 64.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.6
68798980 Antisense, RP_050217_01_G06, Mouse strain C57BL/6J (56 days, male) 13.6

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