MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.3 nTPM
HPA Brain:61.9 nTPM
GTEx:28.3 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:55.7 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2219 Male, age 76, both hemispheres 60.4
2586 Male, age 75, left hemisphere 52.4
1833 Male, age 53, unknown 34.8
1827 Male, age 72, unknown 33.9
2828 Female, age 72, unknown 33.2
2666 Male, age 74, left hemisphere 32.5
1870 Female, age 42, unknown 28.7
1830 Male, age 51, unknown 27.6
2411 Female, age 72, unknown 27.1
2019 Male, age 18, unknown 22.1
Dorsal raphe nucleus
nTPM: 30.9
2298 Female, age 72, unknown 33.4
2750 Male, age 76, both hemispheres 31.1
2047 Male, age 72, unknown 31.0
1828 Male, age 53, unknown 30.1
2016 Female, age 72, unknown 28.8
Inferior colliculus
nTPM: 30.6
1848 Female, age 42, unknown 34.4
1890 Male, age 53, unknown 32.1
2849 Male, age 72, unknown 29.4
2097 Female, age 72, unknown 26.7
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Periaquaductal grey, anterior
nTPM: 38.3
2502 Female, age 75, unknown 42.7
1795 Male, age 51, unknown 37.6
1947 Male, age 18, unknown 34.7
Periaquaductal grey, dorsal
nTPM: 32.4
1840 Male, age 53, unknown 43.1
1831 Male, age 72, unknown 31.9
2850 Male, age 76, both hemispheres 28.7
2464 Female, age 72, unknown 25.8
Periaquaductal grey, lateral
nTPM: 28.2
2053 Male, age 18, unknown 31.4
2272 Male, age 74, both hemispheres 29.0
2140 Male, age 76, both hemispheres 24.3
Pretectal area
nTPM: 33.6
1816 Male, age 51, unknown 48.9
1944 Female, age 72, unknown 39.5
1815 Male, age 53, unknown 37.0
2007 Male, age 72, unknown 36.2
1817 Female, age 42, unknown 33.7
2825 Male, age 18, unknown 31.9
2407 Male, age 75, both hemispheres 31.4
2667 Female, age 75, unknown 30.9
2316 Male, age 76, right hemisphere 29.0
2224 Female, age 72, unknown 28.0
2273 Male, age 74, both hemispheres 22.7
Red nucleus
nTPM: 31.2
2584 Male, age 75, left hemisphere 47.1
1904 Male, age 53, unknown 34.5
2725 Female, age 75, unknown 33.2
2769 Male, age 72, unknown 31.7
1821 Female, age 72, unknown 30.7
2503 Female, age 72, unknown 30.1
2227 Male, age 72, unknown 30.0
2588 Male, age 74, left hemisphere 29.7
1865 Male, age 51, unknown 29.4
1954 Female, age 42, unknown 27.5
2823 Male, age 76, right hemisphere 26.9
2785 Male, age 18, unknown 23.2
Substantia nigra
nTPM: 61.9
2699 Male, age 18, unknown 107.6
1851 Male, age 51, unknown 87.8
1916 Female, age 42, unknown 72.7
2665 Male, age 74, both hemispheres 67.8
2409 Female, age 72, unknown 65.2
2241 Male, age 72, unknown 52.7
2583 Male, age 75, right hemisphere 52.5
2590 Female, age 75, unknown 42.5
1889 Female, age 72, unknown 36.3
1941 Male, age 53, unknown 33.9
Superior colliculus
nTPM: 34.1
2668 Female, age 75, unknown 40.9
2087 Female, age 72, unknown 39.9
1796 Male, age 53, unknown 39.2
2261 Male, age 18, unknown 36.9
2664 Male, age 75, both hemispheres 36.7
1995 Male, age 72, unknown 34.7
1913 Female, age 42, unknown 30.2
2587 Male, age 74, left hemisphere 28.1
1839 Male, age 51, unknown 27.5
1895 Male, age 76, right hemisphere 27.3
Ventral tegmental area
nTPM: 50.3
1915 Female, age 42, unknown 74.4
2223 Female, age 72, unknown 62.7
2410 Female, age 72, unknown 45.7
2218 Male, age 76, both hemispheres 44.6
2021 Male, age 53, unknown 40.0
1942 Male, age 51, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 286.7
Min nTPM: 5.9
Std nTPM: 29.5
Median nTPM: 20.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 286.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 136.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 121.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 114.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 101.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 71.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 65.6
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 61.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 58.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 53.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 50.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 9.0
Min nTPM: 5.3
Sample A Female 8.5
Sample B Female 7.3
Sample C Male 9.0
Sample D Male 5.3
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 18.6
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 8.0
Sample C Male 15.4
Sample D Male 18.6
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 7.6
Min nTPM: 5.8
Sample B Female 5.8
Sample C Male 7.6
Sample D Male 5.9
Superior colliculi
nTPM: 9.5
Samples: 4

Max nTPM: 10.8
Min nTPM: 8.8
Sample A Female 9.3
Sample B Female 8.8
Sample C Male 8.9
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 58.2
Min nTPM: 53.6
Sample A Male 53.7
Sample B Male 57.1
Sample C Female 58.2
Sample D Female 53.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
583559 Antisense, RP_040831_02_H08, Mouse strain C57BL/6J (56 days, male) 6.8

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