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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
971.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 971.1
Samples: 152
Max nTPM: 2122.1
Min nTPM: 30.4
Std nTPM: 394.4
Median nTPM: 949.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
2122.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
1946.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
1944.8
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
1932.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
1889.8
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
1857.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
1752.5
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
1690.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
1631.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
1610.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
1597.4
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
1559.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
1536.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
1522.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
1484.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
1475.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
1456.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
1442.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
1431.3
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
1427.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
1425.8
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
1381.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
1378.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
1369.5
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
1338.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
1337.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
1303.4
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
1290.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
1276.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
1264.9
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
1253.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
1253.6
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
1248.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
1244.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
1234.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
1230.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
1229.1
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
1217.4
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
1208.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
1206.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
1203.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
1202.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
1191.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
1187.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
1184.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
1184.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
1175.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
1172.0
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
1164.9
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
1140.0
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
1139.6
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
1119.1
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
1116.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
1101.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
1100.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
1098.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
1088.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
1063.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
1061.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
1054.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
1040.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
1035.7
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
1033.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
1018.4
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
1015.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
1013.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
1012.1
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
1011.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
998.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
989.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
977.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
968.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
967.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
964.1
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
958.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
951.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
947.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
913.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
910.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
904.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
903.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
894.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
890.8
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
885.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
883.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
873.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
870.2
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
861.5
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
846.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
832.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
826.7
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
826.1
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
813.6
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
804.8
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
804.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
802.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
794.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
789.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
784.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
770.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
767.2
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
766.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
766.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
753.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
749.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
744.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
730.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
729.4
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
724.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
723.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
721.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
720.3
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
717.4
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
710.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
702.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
699.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
688.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
682.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
678.2
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
668.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
664.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
663.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
662.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
662.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
648.9
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
619.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
617.4
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
612.0
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
610.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
589.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
575.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
572.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
561.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
555.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
467.3
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
465.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
450.8
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
440.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
438.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
415.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
413.8
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
405.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
399.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
390.6
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
374.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
374.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
340.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
273.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
267.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
265.4
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
196.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
30.4
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1217.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1217.8
Samples: 4
Max nTPM: 1491.3
Min nTPM: 990.0
Sample A
Male
990.0
Sample B
Male
1154.9
Sample C
Female
1491.3
Sample D
Female
1235.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
