MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.3 nTPM
HPA Brain:62.8 nTPM
GTEx:32.3 nTPM
FANTOM5:122.5 Scaled Tags Per Million
Pig:189.5 nTPM
Mouse:78.1 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.7
2411 Female, age 72, unknown 67.9
1870 Female, age 42, unknown 65.9
1833 Male, age 53, unknown 59.5
1830 Male, age 51, unknown 58.4
1827 Male, age 72, unknown 54.2
2219 Male, age 76, both hemispheres 47.2
2586 Male, age 75, left hemisphere 45.4
2666 Male, age 74, left hemisphere 45.1
2828 Female, age 72, unknown 44.0
2019 Male, age 18, unknown 39.7
Dorsal raphe nucleus
nTPM: 59.4
1828 Male, age 53, unknown 63.0
2047 Male, age 72, unknown 61.9
2750 Male, age 76, both hemispheres 60.1
2298 Female, age 72, unknown 59.7
2016 Female, age 72, unknown 52.3
Inferior colliculus
nTPM: 50.1
1848 Female, age 42, unknown 59.1
2097 Female, age 72, unknown 50.3
2849 Male, age 72, unknown 49.2
1890 Male, age 53, unknown 41.7
Median raphe nucleus
nTPM: 62.8
2220 Male, age 76, midline 62.8
Periaquaductal grey, anterior
nTPM: 62.4
1947 Male, age 18, unknown 73.6
2502 Female, age 75, unknown 71.5
1795 Male, age 51, unknown 42.2
Periaquaductal grey, dorsal
nTPM: 49.2
2850 Male, age 76, both hemispheres 54.8
2464 Female, age 72, unknown 50.1
1840 Male, age 53, unknown 49.3
1831 Male, age 72, unknown 42.5
Periaquaductal grey, lateral
nTPM: 49.4
2053 Male, age 18, unknown 60.1
2140 Male, age 76, both hemispheres 44.2
2272 Male, age 74, both hemispheres 43.9
Pretectal area
nTPM: 51.6
2224 Female, age 72, unknown 58.4
2667 Female, age 75, unknown 56.6
2825 Male, age 18, unknown 55.4
1815 Male, age 53, unknown 54.1
2273 Male, age 74, both hemispheres 54.1
1944 Female, age 72, unknown 53.0
1817 Female, age 42, unknown 52.7
2007 Male, age 72, unknown 51.1
1816 Male, age 51, unknown 47.6
2316 Male, age 76, right hemisphere 45.5
2407 Male, age 75, both hemispheres 39.1
Red nucleus
nTPM: 50.8
1821 Female, age 72, unknown 77.0
1865 Male, age 51, unknown 68.2
1954 Female, age 42, unknown 57.8
2769 Male, age 72, unknown 51.4
1904 Male, age 53, unknown 51.1
2227 Male, age 72, unknown 50.9
2725 Female, age 75, unknown 49.7
2503 Female, age 72, unknown 46.4
2823 Male, age 76, right hemisphere 40.1
2588 Male, age 74, left hemisphere 39.6
2785 Male, age 18, unknown 38.7
2584 Male, age 75, left hemisphere 38.5
Substantia nigra
nTPM: 53.2
1916 Female, age 42, unknown 67.7
2241 Male, age 72, unknown 66.6
1941 Male, age 53, unknown 64.8
1889 Female, age 72, unknown 60.5
1851 Male, age 51, unknown 50.2
2409 Female, age 72, unknown 49.9
2699 Male, age 18, unknown 48.2
2665 Male, age 74, both hemispheres 42.7
2583 Male, age 75, right hemisphere 40.5
2590 Female, age 75, unknown 40.4
Superior colliculus
nTPM: 50.0
1839 Male, age 51, unknown 58.1
2587 Male, age 74, left hemisphere 57.6
2261 Male, age 18, unknown 55.8
1895 Male, age 76, right hemisphere 55.1
2668 Female, age 75, unknown 49.1
2664 Male, age 75, both hemispheres 47.7
1913 Female, age 42, unknown 47.5
2087 Female, age 72, unknown 45.1
1796 Male, age 53, unknown 44.8
1995 Male, age 72, unknown 39.2
Ventral tegmental area
nTPM: 54.2
2223 Female, age 72, unknown 69.3
2410 Female, age 72, unknown 63.4
2218 Male, age 76, both hemispheres 53.0
1915 Female, age 42, unknown 49.5
1942 Male, age 51, unknown 47.4
2021 Male, age 53, unknown 42.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.3
Samples: 139

Max nTPM: 75.9
Min nTPM: 11.7
Std nTPM: 11.6
Median nTPM: 30.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 66.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 64.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 63.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 60.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 51.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 51.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 50.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 49.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 49.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.5
FF:10158-103A5 76 years, female 122.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 189.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 163.1
Samples: 4

Max nTPM: 209.8
Min nTPM: 112.3
Sample A Female 209.8
Sample B Female 112.3
Sample C Male 172.7
Sample D Male 157.6
Midbrain
nTPM: 189.5
Samples: 4

Max nTPM: 293.0
Min nTPM: 127.2
Sample A Female 293.0
Sample B Female 194.4
Sample C Male 143.5
Sample D Male 127.2
Periaqueductal gray
nTPM: 170.8
Samples: 3

Max nTPM: 181.2
Min nTPM: 158.0
Sample B Female 173.2
Sample C Male 181.2
Sample D Male 158.0
Superior colliculi
nTPM: 133.9
Samples: 4

Max nTPM: 161.0
Min nTPM: 87.1
Sample A Female 137.4
Sample B Female 87.1
Sample C Male 149.9
Sample D Male 161.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 78.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 80.5
Min nTPM: 75.7
Sample A Male 75.7
Sample B Male 77.4
Sample C Female 78.6
Sample D Female 80.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
227160 Antisense, RP_040604_01_H06, Mouse strain C57BL/6J (56 days, male) 8.0
71724560 Antisense, RP_050927_04_H09, Mouse strain C57BL/6J (56 days, male) 2.4
77414164 Antisense, RP_070205_01_F07, Mouse strain C57BL/6J (56 days, male) 0.5

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