HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:11.5 nTPM
HPA Brain:13.6 nTPM
GTEx:11.5 nTPM
FANTOM5:20.5 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:5.1 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041117Antibody HPA041540
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Hippocampus
nTPM: 11.1
2621 Female, age 67, right hemisphere 12.0
1898 Male, age 80, left hemisphere 11.9
2529 Female, age 94, left hemisphere 11.6
1855 Male, age 76, left hemisphere 11.5
2148 Female, age 91, left hemisphere 10.4
1911 Female, age 85, right hemisphere 9.1
Dentate gyrus
nTPM: 10.9
2246 Female, age 85, both hemispheres 12.5
2010 Male, age 76, both hemispheres 12.1
2531 Female, age 67, both hemispheres 12.1
2530 Female, age 94, left hemisphere 11.3
1927 Female, age 91, both hemispheres 9.2
2528 Male, age 74, both hemispheres 8.2
Entorhinal gyrus
nTPM: 11.4
2764 Male, age 80, right hemisphere 13.3
1787 Male, age 76, left hemisphere 12.5
1938 Female, age 85, left hemisphere 11.7
2117 Female, age 91, right hemisphere 11.4
2613 Female, age 94, left hemisphere 10.3
2686 Male, age 75, right hemisphere 9.6
Hippocampus, CA1
nTPM: 12.8
2749 Male, age 80, left hemisphere 17.6
2045 Male, age 76, both hemispheres 14.6
2082 Female, age 91, right hemisphere 11.7
2527 Male, age 74, both hemispheres 11.0
1873 Female, age 85, both hemispheres 9.3
Hippocampus, CA2
nTPM: 10.8
1892 Male, age 76, both hemispheres 14.3
1940 Female, age 85, left hemisphere 10.7
2113 Female, age 91, right hemisphere 10.2
2249 Male, age 74, both hemispheres 10.2
2437 Female, age 94, left hemisphere 9.8
1963 Male, age 80, left hemisphere 9.3
Hippocampus, CA3
nTPM: 13.6
1867 Male, age 76, both hemispheres 20.6
2620 Female, age 94, left hemisphere 14.8
2137 Male, age 80, left hemisphere 14.5
2861 Female, age 67, both hemispheres 11.1
2436 Male, age 74, both hemispheres 10.6
1891 Female, age 85, both hemispheres 10.2
Parahippocampal cortex
nTPM: 11.0
2018 Male, age 76, both hemispheres 13.9
2532 Female, age 72, left hemisphere 13.0
1933 Female, age 85, both hemispheres 12.5
2245 Female, age 91, both hemispheres 12.1
2250 Female, age 67, right hemisphere 12.1
1990 Female, age 91, right hemisphere 10.2
1850 Male, age 80, both hemispheres 9.8
2692 Male, age 74, both hemispheres 9.7
2622 Female, age 67, right hemisphere 9.4
2693 Female, age 94, both hemispheres 7.4
Perirhinal gyrus
nTPM: 12.0
1794 Male, age 80, right hemisphere 14.0
1847 Female, age 91, left hemisphere 12.3
2521 Female, age 94, right hemisphere 11.7
1841 Female, age 85, right hemisphere 11.6
2848 Male, age 76, right hemisphere 10.3
Subiculum
nTPM: 12.4
1901 Male, age 80, both hemispheres 14.8
2042 Male, age 76, both hemispheres 14.6
1977 Female, age 85, both hemispheres 13.4
2438 Female, age 94, left hemisphere 12.4
2619 Male, age 74, both hemispheres 10.2
2729 Female, age 91, right hemisphere 9.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.5
Samples: 197

Max nTPM: 28.6
Min nTPM: 4.5
Std nTPM: 3.0
Median nTPM: 11.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 28.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 22.1
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 19.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 18.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 17.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 17.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 17.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 16.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 16.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 16.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 20.5
FF:10153-102I9 76 years, female 21.3
FF:10169-103B7 60 years, female 19.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Subiculum
nTPM: 4.0
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.8
Sample A Female 5.4
Sample B Female 4.4
Sample C Male 2.8
Sample D Male 3.4
Dorsal hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.0
Sample A Female 6.2
Sample B Female 4.9
Sample C Male 5.0
Sample D Male 4.0
Entorhinal cortex
nTPM: 3.8
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.2
Sample A Female 3.8
Sample B Female 4.7
Sample C Male 3.2
Sample D Male 3.3
Ventral hippocampus
nTPM: 4.8
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.9
Sample A Female 5.6
Sample B Female 3.9
Sample C Male 4.7
Sample D Male 5.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.2
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.9
Sample A Male 4.3
Sample B Male 4.5
Sample C Female 3.9
Sample D Female 3.9
Hippocampal formation
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.9
Sample A Male 5.0
Sample B Male 4.9
Sample C Female 5.6
Sample D Female 5.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
68920650 Antisense, RP_050303_01_A03, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org