MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:33.4 nTPM
GTEx:38.9 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:129.2 nTPM
Mouse:33.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2666 Male, age 74, left hemisphere 18.6
1870 Female, age 42, unknown 18.0
1833 Male, age 53, unknown 17.1
2586 Male, age 75, left hemisphere 15.5
2828 Female, age 72, unknown 14.1
1830 Male, age 51, unknown 13.8
2411 Female, age 72, unknown 13.1
1827 Male, age 72, unknown 11.9
2219 Male, age 76, both hemispheres 10.5
2019 Male, age 18, unknown 7.6
Dorsal raphe nucleus
nTPM: 28.9
2298 Female, age 72, unknown 34.5
2016 Female, age 72, unknown 34.4
2047 Male, age 72, unknown 32.1
1828 Male, age 53, unknown 28.8
2750 Male, age 76, both hemispheres 14.8
Inferior colliculus
nTPM: 16.8
2849 Male, age 72, unknown 21.3
1890 Male, age 53, unknown 16.6
2097 Female, age 72, unknown 16.3
1848 Female, age 42, unknown 13.1
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 18.3
1795 Male, age 51, unknown 21.8
1947 Male, age 18, unknown 17.3
2502 Female, age 75, unknown 15.8
Periaquaductal grey, dorsal
nTPM: 33.4
2850 Male, age 76, both hemispheres 49.0
1840 Male, age 53, unknown 37.7
1831 Male, age 72, unknown 28.2
2464 Female, age 72, unknown 18.8
Periaquaductal grey, lateral
nTPM: 29.4
2140 Male, age 76, both hemispheres 34.6
2272 Male, age 74, both hemispheres 27.6
2053 Male, age 18, unknown 25.8
Pretectal area
nTPM: 17.4
2825 Male, age 18, unknown 31.4
2273 Male, age 74, both hemispheres 30.8
2224 Female, age 72, unknown 29.3
2407 Male, age 75, both hemispheres 22.6
2316 Male, age 76, right hemisphere 16.1
2667 Female, age 75, unknown 12.8
1817 Female, age 42, unknown 11.8
1815 Male, age 53, unknown 11.3
1944 Female, age 72, unknown 8.5
2007 Male, age 72, unknown 8.5
1816 Male, age 51, unknown 8.3
Red nucleus
nTPM: 13.6
2584 Male, age 75, left hemisphere 16.1
2769 Male, age 72, unknown 15.9
1821 Female, age 72, unknown 15.4
1904 Male, age 53, unknown 14.8
2227 Male, age 72, unknown 14.8
2725 Female, age 75, unknown 14.5
1865 Male, age 51, unknown 13.4
1954 Female, age 42, unknown 13.2
2503 Female, age 72, unknown 12.9
2823 Male, age 76, right hemisphere 12.8
2785 Male, age 18, unknown 9.9
2588 Male, age 74, left hemisphere 9.5
Substantia nigra
nTPM: 16.7
2699 Male, age 18, unknown 29.0
2590 Female, age 75, unknown 20.0
2665 Male, age 74, both hemispheres 19.7
1851 Male, age 51, unknown 19.3
2583 Male, age 75, right hemisphere 17.5
1916 Female, age 42, unknown 16.8
1889 Female, age 72, unknown 13.7
2241 Male, age 72, unknown 13.6
1941 Male, age 53, unknown 10.0
2409 Female, age 72, unknown 7.0
Superior colliculus
nTPM: 16.5
2664 Male, age 75, both hemispheres 27.7
1995 Male, age 72, unknown 21.4
2587 Male, age 74, left hemisphere 17.7
1796 Male, age 53, unknown 17.6
1839 Male, age 51, unknown 16.6
1913 Female, age 42, unknown 16.4
2668 Female, age 75, unknown 15.8
2261 Male, age 18, unknown 11.6
2087 Female, age 72, unknown 11.0
1895 Male, age 76, right hemisphere 9.6
Ventral tegmental area
nTPM: 23.2
1915 Female, age 42, unknown 27.5
1942 Male, age 51, unknown 26.3
2021 Male, age 53, unknown 25.0
2223 Female, age 72, unknown 24.0
2218 Male, age 76, both hemispheres 21.3
2410 Female, age 72, unknown 15.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 370.2
Min nTPM: 3.3
Std nTPM: 52.5
Median nTPM: 24.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 370.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 290.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 274.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 221.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 197.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 194.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 164.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 121.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 104.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 102.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 84.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 129.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.4
Samples: 4

Max nTPM: 156.0
Min nTPM: 65.7
Sample A Female 77.5
Sample B Female 156.0
Sample C Male 65.7
Sample D Male 94.4
Midbrain
nTPM: 56.6
Samples: 4

Max nTPM: 76.5
Min nTPM: 42.3
Sample A Female 76.5
Sample B Female 47.3
Sample C Male 60.1
Sample D Male 42.3
Periaqueductal gray
nTPM: 34.2
Samples: 3

Max nTPM: 35.5
Min nTPM: 32.5
Sample B Female 34.5
Sample C Male 35.5
Sample D Male 32.5
Superior colliculi
nTPM: 129.2
Samples: 4

Max nTPM: 260.3
Min nTPM: 60.6
Sample A Female 118.5
Sample B Female 260.3
Sample C Male 60.6
Sample D Male 77.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.7
Samples: 4

Max nTPM: 44.4
Min nTPM: 27.5
Sample A Male 44.4
Sample B Male 27.5
Sample C Female 28.5
Sample D Female 34.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1227 Antisense, RP_Baylor_102902, Mouse strain C57BL/6J (56 days, male) 0.4
1228 Antisense, RP_Baylor_102902, Mouse strain C57BL/6J (56 days, male) 0.2

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