MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:71.2 nTPM
GTEx:24.5 nTPM
FANTOM5:49.1 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:46.7 nTPM
Allen mouse:13.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 61.3
2666 Male, age 74, left hemisphere 76.6
2219 Male, age 76, both hemispheres 75.1
2586 Male, age 75, left hemisphere 68.7
1827 Male, age 72, unknown 65.7
2411 Female, age 72, unknown 60.1
2019 Male, age 18, unknown 57.4
2828 Female, age 72, unknown 57.3
1870 Female, age 42, unknown 52.0
1833 Male, age 53, unknown 50.4
1830 Male, age 51, unknown 50.0
Dorsal raphe nucleus
nTPM: 55.3
2047 Male, age 72, unknown 63.0
2298 Female, age 72, unknown 57.6
1828 Male, age 53, unknown 57.3
2750 Male, age 76, both hemispheres 56.1
2016 Female, age 72, unknown 42.5
Inferior colliculus
nTPM: 57.3
1890 Male, age 53, unknown 62.8
2097 Female, age 72, unknown 62.3
1848 Female, age 42, unknown 53.5
2849 Male, age 72, unknown 50.4
Median raphe nucleus
nTPM: 62.6
2220 Male, age 76, midline 62.6
Periaquaductal grey, anterior
nTPM: 65.9
1947 Male, age 18, unknown 68.0
1795 Male, age 51, unknown 66.8
2502 Female, age 75, unknown 63.0
Periaquaductal grey, dorsal
nTPM: 50.0
1831 Male, age 72, unknown 57.5
1840 Male, age 53, unknown 51.7
2464 Female, age 72, unknown 50.6
2850 Male, age 76, both hemispheres 40.1
Periaquaductal grey, lateral
nTPM: 48.1
2053 Male, age 18, unknown 53.3
2272 Male, age 74, both hemispheres 49.9
2140 Male, age 76, both hemispheres 41.1
Pretectal area
nTPM: 63.2
1816 Male, age 51, unknown 82.7
2007 Male, age 72, unknown 75.4
1817 Female, age 42, unknown 71.0
1944 Female, age 72, unknown 70.9
1815 Male, age 53, unknown 66.6
2667 Female, age 75, unknown 65.1
2407 Male, age 75, both hemispheres 61.3
2825 Male, age 18, unknown 55.2
2224 Female, age 72, unknown 53.9
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 44.0
Red nucleus
nTPM: 54.2
2588 Male, age 74, left hemisphere 65.8
2584 Male, age 75, left hemisphere 63.4
2725 Female, age 75, unknown 58.5
1821 Female, age 72, unknown 57.3
2785 Male, age 18, unknown 57.2
2503 Female, age 72, unknown 51.9
2769 Male, age 72, unknown 51.4
1904 Male, age 53, unknown 50.2
2823 Male, age 76, right hemisphere 49.7
1954 Female, age 42, unknown 49.1
1865 Male, age 51, unknown 48.3
2227 Male, age 72, unknown 48.1
Substantia nigra
nTPM: 71.2
1916 Female, age 42, unknown 97.8
1851 Male, age 51, unknown 79.6
1941 Male, age 53, unknown 76.8
2409 Female, age 72, unknown 75.2
1889 Female, age 72, unknown 71.4
2241 Male, age 72, unknown 69.7
2583 Male, age 75, right hemisphere 69.3
2665 Male, age 74, both hemispheres 60.4
2699 Male, age 18, unknown 58.3
2590 Female, age 75, unknown 53.4
Superior colliculus
nTPM: 57.8
2668 Female, age 75, unknown 69.2
2261 Male, age 18, unknown 67.1
2087 Female, age 72, unknown 64.5
1796 Male, age 53, unknown 63.7
2664 Male, age 75, both hemispheres 62.2
1895 Male, age 76, right hemisphere 55.3
1839 Male, age 51, unknown 54.1
2587 Male, age 74, left hemisphere 50.1
1913 Female, age 42, unknown 47.8
1995 Male, age 72, unknown 43.6
Ventral tegmental area
nTPM: 64.4
2410 Female, age 72, unknown 80.6
1915 Female, age 42, unknown 67.6
2218 Male, age 76, both hemispheres 64.9
2223 Female, age 72, unknown 60.9
1942 Male, age 51, unknown 59.6
2021 Male, age 53, unknown 52.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.5
Samples: 139

Max nTPM: 60.6
Min nTPM: 7.6
Std nTPM: 10.4
Median nTPM: 22.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 59.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 47.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 44.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 44.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 42.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 42.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 42.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 41.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.1
FF:10158-103A5 76 years, female 49.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 50.8
Min nTPM: 19.5
Sample A Female 45.3
Sample B Female 28.5
Sample C Male 50.8
Sample D Male 19.5
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 57.5
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 29.4
Sample C Male 57.5
Sample D Male 48.6
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 39.0
Min nTPM: 28.0
Sample B Female 28.0
Sample C Male 39.0
Sample D Male 28.9
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 45.7
Min nTPM: 37.6
Sample A Female 37.6
Sample B Female 37.8
Sample C Male 45.7
Sample D Male 44.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.7
Samples: 4

Max nTPM: 50.6
Min nTPM: 41.6
Sample A Male 41.6
Sample B Male 45.8
Sample C Female 50.6
Sample D Female 48.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.7
69236700 Antisense, RP_050329_04_C01, Mouse strain C57BL/6J (56 days, male) 13.7

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