MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.9 nTPM
HPA Brain:14.3 nTPM
GTEx:55.9 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:32.2 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
2586 Male, age 75, left hemisphere 17.0
2828 Female, age 72, unknown 13.0
1827 Male, age 72, unknown 12.5
1870 Female, age 42, unknown 12.5
2411 Female, age 72, unknown 12.2
1833 Male, age 53, unknown 11.0
1830 Male, age 51, unknown 10.8
2219 Male, age 76, both hemispheres 10.2
2019 Male, age 18, unknown 10.0
2666 Male, age 74, left hemisphere 9.0
Dorsal raphe nucleus
nTPM: 13.8
2016 Female, age 72, unknown 15.1
2298 Female, age 72, unknown 14.0
1828 Male, age 53, unknown 13.9
2047 Male, age 72, unknown 13.6
2750 Male, age 76, both hemispheres 12.2
Inferior colliculus
nTPM: 13.3
1848 Female, age 42, unknown 14.2
2097 Female, age 72, unknown 14.0
1890 Male, age 53, unknown 12.7
2849 Male, age 72, unknown 12.4
Median raphe nucleus
nTPM: 11.3
2220 Male, age 76, midline 11.3
Periaquaductal grey, anterior
nTPM: 14.3
2502 Female, age 75, unknown 14.8
1795 Male, age 51, unknown 14.4
1947 Male, age 18, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 13.3
1840 Male, age 53, unknown 15.3
2850 Male, age 76, both hemispheres 13.9
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 11.6
Periaquaductal grey, lateral
nTPM: 13.5
2053 Male, age 18, unknown 14.0
2272 Male, age 74, both hemispheres 13.5
2140 Male, age 76, both hemispheres 13.0
Pretectal area
nTPM: 12.8
2273 Male, age 74, both hemispheres 15.4
2224 Female, age 72, unknown 13.7
2825 Male, age 18, unknown 13.0
1815 Male, age 53, unknown 12.8
1817 Female, age 42, unknown 12.8
2667 Female, age 75, unknown 12.8
1816 Male, age 51, unknown 12.5
1944 Female, age 72, unknown 12.3
2316 Male, age 76, right hemisphere 12.1
2407 Male, age 75, both hemispheres 11.9
2007 Male, age 72, unknown 11.6
Red nucleus
nTPM: 12.1
2725 Female, age 75, unknown 14.0
2227 Male, age 72, unknown 13.4
1865 Male, age 51, unknown 13.1
1904 Male, age 53, unknown 12.6
1954 Female, age 42, unknown 12.6
2769 Male, age 72, unknown 12.6
2503 Female, age 72, unknown 12.4
1821 Female, age 72, unknown 12.0
2785 Male, age 18, unknown 11.2
2823 Male, age 76, right hemisphere 11.0
2584 Male, age 75, left hemisphere 10.7
2588 Male, age 74, left hemisphere 9.3
Substantia nigra
nTPM: 12.9
2409 Female, age 72, unknown 16.1
1916 Female, age 42, unknown 14.9
2699 Male, age 18, unknown 13.8
2241 Male, age 72, unknown 13.6
2583 Male, age 75, right hemisphere 12.9
1851 Male, age 51, unknown 12.8
1889 Female, age 72, unknown 12.3
2665 Male, age 74, both hemispheres 11.7
2590 Female, age 75, unknown 11.3
1941 Male, age 53, unknown 10.1
Superior colliculus
nTPM: 12.3
1796 Male, age 53, unknown 14.5
2261 Male, age 18, unknown 13.9
2087 Female, age 72, unknown 13.0
1995 Male, age 72, unknown 12.4
2587 Male, age 74, left hemisphere 12.1
2664 Male, age 75, both hemispheres 11.9
1839 Male, age 51, unknown 11.7
2668 Female, age 75, unknown 11.5
1913 Female, age 42, unknown 11.2
1895 Male, age 76, right hemisphere 10.4
Ventral tegmental area
nTPM: 12.4
2410 Female, age 72, unknown 13.5
1915 Female, age 42, unknown 13.3
1942 Male, age 51, unknown 13.0
2021 Male, age 53, unknown 11.9
2218 Male, age 76, both hemispheres 11.4
2223 Female, age 72, unknown 11.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.9
Samples: 139

Max nTPM: 105.3
Min nTPM: 26.1
Std nTPM: 14.9
Median nTPM: 54.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 105.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 93.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 91.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 90.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 88.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 87.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 87.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 83.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 82.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 82.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.0
Samples: 4

Max nTPM: 29.6
Min nTPM: 20.0
Sample A Female 29.6
Sample B Female 21.1
Sample C Male 20.0
Sample D Male 21.3
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 21.7
Sample A Female 25.5
Sample B Female 25.0
Sample C Male 21.7
Sample D Male 25.8
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 24.5
Min nTPM: 23.9
Sample B Female 24.5
Sample C Male 24.0
Sample D Male 23.9
Superior colliculi
nTPM: 26.2
Samples: 4

Max nTPM: 31.9
Min nTPM: 20.5
Sample A Female 31.9
Sample B Female 20.5
Sample C Male 27.8
Sample D Male 24.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 34.1
Min nTPM: 30.4
Sample A Male 33.0
Sample B Male 31.4
Sample C Female 30.4
Sample D Female 34.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74581056 Antisense, RP_060215_02_D12, Mouse strain C57BL/6J (56 days, male) 0.0

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