MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA Brain:28.3 nTPM
GTEx:1.2 nTPM
FANTOM5:2.5 Scaled Tags Per Million
Pig:1.5 nTPM
Mouse:0.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.7
2219 Male, age 76, both hemispheres 28.8
1833 Male, age 53, unknown 26.0
1830 Male, age 51, unknown 25.0
2666 Male, age 74, left hemisphere 21.1
1827 Male, age 72, unknown 20.5
2019 Male, age 18, unknown 20.0
2828 Female, age 72, unknown 20.0
2411 Female, age 72, unknown 17.9
2586 Male, age 75, left hemisphere 14.0
1870 Female, age 42, unknown 13.1
Dorsal raphe nucleus
nTPM: 18.9
2750 Male, age 76, both hemispheres 25.8
2016 Female, age 72, unknown 19.6
1828 Male, age 53, unknown 16.9
2298 Female, age 72, unknown 16.5
2047 Male, age 72, unknown 16.0
Inferior colliculus
nTPM: 17.1
2849 Male, age 72, unknown 21.9
2097 Female, age 72, unknown 16.3
1890 Male, age 53, unknown 15.2
1848 Female, age 42, unknown 15.0
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 21.2
2502 Female, age 75, unknown 24.8
1795 Male, age 51, unknown 19.7
1947 Male, age 18, unknown 19.2
Periaquaductal grey, dorsal
nTPM: 20.7
2464 Female, age 72, unknown 25.3
2850 Male, age 76, both hemispheres 22.6
1831 Male, age 72, unknown 21.5
1840 Male, age 53, unknown 13.3
Periaquaductal grey, lateral
nTPM: 24.7
2140 Male, age 76, both hemispheres 29.4
2272 Male, age 74, both hemispheres 26.3
2053 Male, age 18, unknown 18.5
Pretectal area
nTPM: 20.2
2316 Male, age 76, right hemisphere 27.2
2273 Male, age 74, both hemispheres 23.9
2825 Male, age 18, unknown 21.9
2224 Female, age 72, unknown 21.8
2667 Female, age 75, unknown 21.6
1815 Male, age 53, unknown 20.7
2407 Male, age 75, both hemispheres 20.3
1816 Male, age 51, unknown 19.4
1944 Female, age 72, unknown 16.5
2007 Male, age 72, unknown 14.5
1817 Female, age 42, unknown 14.2
Red nucleus
nTPM: 20.0
2823 Male, age 76, right hemisphere 26.5
2227 Male, age 72, unknown 23.5
2503 Female, age 72, unknown 22.5
1904 Male, age 53, unknown 20.4
1954 Female, age 42, unknown 20.2
2725 Female, age 75, unknown 20.1
2769 Male, age 72, unknown 19.3
2584 Male, age 75, left hemisphere 18.5
1865 Male, age 51, unknown 18.2
2785 Male, age 18, unknown 18.2
2588 Male, age 74, left hemisphere 17.2
1821 Female, age 72, unknown 15.5
Substantia nigra
nTPM: 16.8
1941 Male, age 53, unknown 22.8
2665 Male, age 74, both hemispheres 20.0
2699 Male, age 18, unknown 19.8
2583 Male, age 75, right hemisphere 16.9
2241 Male, age 72, unknown 16.3
2590 Female, age 75, unknown 16.1
1916 Female, age 42, unknown 15.4
1851 Male, age 51, unknown 14.3
2409 Female, age 72, unknown 14.3
1889 Female, age 72, unknown 12.0
Superior colliculus
nTPM: 19.6
2261 Male, age 18, unknown 23.3
2664 Male, age 75, both hemispheres 23.2
1839 Male, age 51, unknown 22.4
1913 Female, age 42, unknown 22.3
2087 Female, age 72, unknown 20.1
1995 Male, age 72, unknown 19.1
1895 Male, age 76, right hemisphere 18.6
1796 Male, age 53, unknown 16.1
2587 Male, age 74, left hemisphere 15.8
2668 Female, age 75, unknown 15.3
Ventral tegmental area
nTPM: 20.0
2218 Male, age 76, both hemispheres 26.1
2223 Female, age 72, unknown 23.0
2021 Male, age 53, unknown 22.8
1942 Male, age 51, unknown 18.7
1915 Female, age 42, unknown 16.8
2410 Female, age 72, unknown 13.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.2
Samples: 139

Max nTPM: 4.0
Min nTPM: 0.2
Std nTPM: 0.6
Median nTPM: 1.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 3.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 3.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 2.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 2.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 2.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 2.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.5
FF:10158-103A5 76 years, female 2.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 1.7
Sample C Male 1.2
Sample D Male 1.6
Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.1
Sample C Male 1.2
Sample D Male 1.3
Periaqueductal gray
nTPM: 1.5
Samples: 3

Max nTPM: 1.7
Min nTPM: 1.1
Sample B Female 1.6
Sample C Male 1.1
Sample D Male 1.7
Superior colliculi
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 1.0
Sample C Male 1.3
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68743739 Antisense, RP_050203_01_E06, Mouse strain C57BL/6J (56 days, male) 0.4

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