HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Mouse brain, Intensity
Hippocampal formationi 		120.850
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:89.7 nTPM
GTEx:32.1 nTPM
FANTOM5:19.7 Scaled Tags Per Million
Pig:71.5 nTPM
Mouse:69.0 nTPM
Allen mouse:10.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017389Antibody HPA063713
Glial cells LowLow
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA063713
Hippocampal formation mean intensity 120.850
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 102.750
Molecular layer of the dentate gyrus 75.066
Granular dentate gyrus 116.543
CA1 - oriens layer 61.552
CA1 - pyramidal layer 89.931
CA1 - radiatum layer 77.179
CA2 - oriens layer 63.649
CA2 - pyramidal layer 91.594
CA2 - radiatum layer 81.596
CA3 - oriens layer 73.019
CA3 - pyramidal layer 120.850
CA3 - radiatum layer 90.964
Stratum lucidum 84.018
Lacunosum moleculare 59.199
Subiculum 95.434

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 89.7
Sample id Sample description nTPM
Hippocampus
nTPM: 45.9
1898 Male, age 80, left hemisphere 51.2
2621 Female, age 67, right hemisphere 50.8
2529 Female, age 94, left hemisphere 49.5
1911 Female, age 85, right hemisphere 48.3
2148 Female, age 91, left hemisphere 39.4
1855 Male, age 76, left hemisphere 36.2
Dentate gyrus
nTPM: 47.0
1927 Female, age 91, both hemispheres 55.3
2531 Female, age 67, both hemispheres 52.7
2246 Female, age 85, both hemispheres 50.8
2530 Female, age 94, left hemisphere 46.9
2528 Male, age 74, both hemispheres 40.1
2010 Male, age 76, both hemispheres 36.1
Entorhinal gyrus
nTPM: 52.5
2613 Female, age 94, left hemisphere 63.1
2764 Male, age 80, right hemisphere 62.2
2686 Male, age 75, right hemisphere 59.7
1787 Male, age 76, left hemisphere 49.8
1938 Female, age 85, left hemisphere 42.4
2117 Female, age 91, right hemisphere 37.8
Hippocampus, CA1
nTPM: 51.5
2749 Male, age 80, left hemisphere 93.4
2082 Female, age 91, right hemisphere 49.1
1873 Female, age 85, both hemispheres 44.3
2045 Male, age 76, both hemispheres 35.8
2527 Male, age 74, both hemispheres 34.8
Hippocampus, CA2
nTPM: 60.0
1940 Female, age 85, left hemisphere 97.8
1892 Male, age 76, both hemispheres 70.8
1963 Male, age 80, left hemisphere 60.2
2437 Female, age 94, left hemisphere 48.9
2113 Female, age 91, right hemisphere 47.7
2249 Male, age 74, both hemispheres 34.4
Hippocampus, CA3
nTPM: 56.4
2137 Male, age 80, left hemisphere 97.2
2620 Female, age 94, left hemisphere 56.9
1867 Male, age 76, both hemispheres 56.7
2861 Female, age 67, both hemispheres 49.8
1891 Female, age 85, both hemispheres 40.9
2436 Male, age 74, both hemispheres 37.0
Parahippocampal cortex
nTPM: 65.8
2622 Female, age 67, right hemisphere 93.0
1850 Male, age 80, both hemispheres 83.2
2532 Female, age 72, left hemisphere 78.9
2693 Female, age 94, both hemispheres 74.8
2245 Female, age 91, both hemispheres 63.8
1933 Female, age 85, both hemispheres 60.5
2018 Male, age 76, both hemispheres 60.3
2250 Female, age 67, right hemisphere 53.2
1990 Female, age 91, right hemisphere 51.7
2692 Male, age 74, both hemispheres 38.4
Perirhinal gyrus
nTPM: 89.7
1794 Male, age 80, right hemisphere 127.6
1841 Female, age 85, right hemisphere 110.4
2521 Female, age 94, right hemisphere 79.5
2848 Male, age 76, right hemisphere 68.1
1847 Female, age 91, left hemisphere 63.1
Subiculum
nTPM: 44.5
1901 Male, age 80, both hemispheres 58.3
1977 Female, age 85, both hemispheres 49.6
2619 Male, age 74, both hemispheres 42.5
2042 Male, age 76, both hemispheres 40.6
2438 Female, age 94, left hemisphere 39.3
2729 Female, age 91, right hemisphere 37.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.1
Samples: 197

Max nTPM: 166.6
Min nTPM: 8.3
Std nTPM: 23.5
Median nTPM: 25.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 166.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 159.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 137.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 135.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 113.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 110.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 100.1
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 86.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 69.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 64.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 63.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.7
FF:10169-103B7 60 years, female 25.9
FF:10153-102I9 76 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 71.5
Pig sample Sample description nTPM
Subiculum
nTPM: 45.3
Samples: 4

Max nTPM: 70.9
Min nTPM: 36.2
Sample A Female 70.9
Sample B Female 36.2
Sample C Male 36.8
Sample D Male 37.1
Dorsal hippocampus
nTPM: 56.9
Samples: 4

Max nTPM: 76.2
Min nTPM: 34.1
Sample A Female 76.2
Sample B Female 68.7
Sample C Male 34.1
Sample D Male 48.6
Entorhinal cortex
nTPM: 71.5
Samples: 4

Max nTPM: 78.8
Min nTPM: 63.8
Sample A Female 77.9
Sample B Female 78.8
Sample C Male 65.3
Sample D Male 63.8
Ventral hippocampus
nTPM: 50.0
Samples: 4

Max nTPM: 69.7
Min nTPM: 30.7
Sample A Female 49.3
Sample B Female 30.7
Sample C Male 50.2
Sample D Male 69.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 69.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.0
Samples: 4

Max nTPM: 83.1
Min nTPM: 56.5
Sample A Male 74.3
Sample B Male 83.1
Sample C Female 56.5
Sample D Female 62.1
Hippocampal formation
nTPM: 50.0
Samples: 4

Max nTPM: 52.3
Min nTPM: 46.0
Sample A Male 51.1
Sample B Male 50.4
Sample C Female 52.3
Sample D Female 46.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.5
70743899 Antisense, RP_050725_02_A05, Mouse strain C57BL/6J (56 days, male) 10.8
67787353 Antisense, RP_040920_01_A07, Mouse strain C57BL/6J (56 days, male) 10.3

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