MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.6 nTPM
HPA Brain:39.7 nTPM
GTEx:13.6 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:22.0 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.7
2219 Male, age 76, both hemispheres 79.5
2586 Male, age 75, left hemisphere 59.4
2019 Male, age 18, unknown 49.1
2666 Male, age 74, left hemisphere 33.7
1827 Male, age 72, unknown 32.0
1830 Male, age 51, unknown 31.2
1833 Male, age 53, unknown 29.7
2411 Female, age 72, unknown 28.4
2828 Female, age 72, unknown 28.2
1870 Female, age 42, unknown 25.8
Dorsal raphe nucleus
nTPM: 24.4
2047 Male, age 72, unknown 25.7
2750 Male, age 76, both hemispheres 25.4
2298 Female, age 72, unknown 24.5
1828 Male, age 53, unknown 23.9
2016 Female, age 72, unknown 22.4
Inferior colliculus
nTPM: 34.1
1890 Male, age 53, unknown 39.5
2097 Female, age 72, unknown 32.9
2849 Male, age 72, unknown 32.3
1848 Female, age 42, unknown 31.7
Median raphe nucleus
nTPM: 27.8
2220 Male, age 76, midline 27.8
Periaquaductal grey, anterior
nTPM: 28.8
1795 Male, age 51, unknown 30.2
2502 Female, age 75, unknown 28.9
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 23.4
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 25.1
1840 Male, age 53, unknown 24.0
2850 Male, age 76, both hemispheres 18.6
Periaquaductal grey, lateral
nTPM: 21.3
2053 Male, age 18, unknown 23.3
2272 Male, age 74, both hemispheres 22.6
2140 Male, age 76, both hemispheres 18.1
Pretectal area
nTPM: 36.7
2007 Male, age 72, unknown 57.5
1816 Male, age 51, unknown 51.0
2407 Male, age 75, both hemispheres 46.0
1817 Female, age 42, unknown 44.1
1944 Female, age 72, unknown 43.1
1815 Male, age 53, unknown 38.6
2667 Female, age 75, unknown 30.0
2316 Male, age 76, right hemisphere 26.4
2273 Male, age 74, both hemispheres 23.3
2825 Male, age 18, unknown 22.8
2224 Female, age 72, unknown 21.1
Red nucleus
nTPM: 31.9
2785 Male, age 18, unknown 49.8
2584 Male, age 75, left hemisphere 49.4
2588 Male, age 74, left hemisphere 33.5
1865 Male, age 51, unknown 32.3
2769 Male, age 72, unknown 31.2
2227 Male, age 72, unknown 30.3
2725 Female, age 75, unknown 27.4
1821 Female, age 72, unknown 27.1
2503 Female, age 72, unknown 26.2
1904 Male, age 53, unknown 26.1
2823 Male, age 76, right hemisphere 25.2
1954 Female, age 42, unknown 23.9
Substantia nigra
nTPM: 31.2
2583 Male, age 75, right hemisphere 48.9
1889 Female, age 72, unknown 38.0
1941 Male, age 53, unknown 36.6
2665 Male, age 74, both hemispheres 34.9
2590 Female, age 75, unknown 32.3
1851 Male, age 51, unknown 29.1
1916 Female, age 42, unknown 27.1
2409 Female, age 72, unknown 23.7
2241 Male, age 72, unknown 21.4
2699 Male, age 18, unknown 19.8
Superior colliculus
nTPM: 36.8
2668 Female, age 75, unknown 44.4
2664 Male, age 75, both hemispheres 44.0
2087 Female, age 72, unknown 40.9
1796 Male, age 53, unknown 38.6
2261 Male, age 18, unknown 37.5
1913 Female, age 42, unknown 35.0
1995 Male, age 72, unknown 33.4
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 32.1
2587 Male, age 74, left hemisphere 28.4
Ventral tegmental area
nTPM: 28.0
2223 Female, age 72, unknown 43.2
1915 Female, age 42, unknown 26.8
2410 Female, age 72, unknown 26.2
2021 Male, age 53, unknown 24.0
2218 Male, age 76, both hemispheres 24.0
1942 Male, age 51, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.6
Samples: 139

Max nTPM: 48.1
Min nTPM: 6.0
Std nTPM: 5.0
Median nTPM: 12.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 48.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 27.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 26.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 24.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 23.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 20.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 20.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 19.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.0
Samples: 4

Max nTPM: 12.7
Min nTPM: 5.4
Sample A Female 12.7
Sample B Female 11.5
Sample C Male 10.4
Sample D Male 5.4
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 36.3
Min nTPM: 10.5
Sample A Female 12.4
Sample B Female 10.5
Sample C Male 36.3
Sample D Male 24.6
Periaqueductal gray
nTPM: 9.9
Samples: 3

Max nTPM: 11.1
Min nTPM: 9.3
Sample B Female 9.4
Sample C Male 11.1
Sample D Male 9.3
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 19.6
Sample A Female 20.2
Sample B Female 21.8
Sample C Male 30.7
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 24.7
Min nTPM: 20.4
Sample A Male 20.4
Sample B Male 21.0
Sample C Female 24.7
Sample D Female 21.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70743899 Antisense, RP_050725_02_A05, Mouse strain C57BL/6J (56 days, male) 3.2
67787353 Antisense, RP_040920_01_A07, Mouse strain C57BL/6J (56 days, male) 1.6

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