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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
6.5
nTPM
HPA Brain:
24.7
nTPM
GTEx:
6.5
nTPM
FANTOM5:
16.0
Scaled Tags Per Million
Pig:
8.6
nTPM
Mouse:
3.0
nTPM
Allen mouse:
1.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
24.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 22.0
2586
Male, age 75, left hemisphere
25.7
2219
Male, age 76, both hemispheres
23.6
2666
Male, age 74, left hemisphere
23.6
1830
Male, age 51, unknown
23.2
2828
Female, age 72, unknown
22.3
1833
Male, age 53, unknown
22.2
2411
Female, age 72, unknown
20.9
1827
Male, age 72, unknown
20.4
1870
Female, age 42, unknown
19.5
2019
Male, age 18, unknown
18.7
Dorsal raphe nucleus nTPM: 23.2
2016
Female, age 72, unknown
24.5
1828
Male, age 53, unknown
23.5
2047
Male, age 72, unknown
23.5
2298
Female, age 72, unknown
22.2
2750
Male, age 76, both hemispheres
22.2
Inferior colliculus nTPM: 22.6
2849
Male, age 72, unknown
25.3
1848
Female, age 42, unknown
23.0
1890
Male, age 53, unknown
22.7
2097
Female, age 72, unknown
19.3
Median raphe nucleus nTPM: 23.2
2220
Male, age 76, midline
23.2
Periaquaductal grey, anterior nTPM: 21.8
1795
Male, age 51, unknown
22.1
2502
Female, age 75, unknown
21.9
1947
Male, age 18, unknown
21.3
Periaquaductal grey, dorsal nTPM: 23.4
2850
Male, age 76, both hemispheres
27.3
2464
Female, age 72, unknown
22.6
1831
Male, age 72, unknown
22.4
1840
Male, age 53, unknown
21.4
Periaquaductal grey, lateral nTPM: 24.7
2140
Male, age 76, both hemispheres
29.0
2053
Male, age 18, unknown
23.7
2272
Male, age 74, both hemispheres
21.2
Pretectal area nTPM: 21.2
2316
Male, age 76, right hemisphere
25.7
2273
Male, age 74, both hemispheres
22.6
2825
Male, age 18, unknown
22.5
2224
Female, age 72, unknown
22.0
1944
Female, age 72, unknown
21.2
2667
Female, age 75, unknown
21.1
1815
Male, age 53, unknown
21.0
2407
Male, age 75, both hemispheres
20.2
1816
Male, age 51, unknown
19.9
1817
Female, age 42, unknown
18.6
2007
Male, age 72, unknown
18.5
Red nucleus nTPM: 21.8
1954
Female, age 42, unknown
24.6
1904
Male, age 53, unknown
24.3
2227
Male, age 72, unknown
23.8
2823
Male, age 76, right hemisphere
23.1
2584
Male, age 75, left hemisphere
21.8
2503
Female, age 72, unknown
21.6
2785
Male, age 18, unknown
21.6
2769
Male, age 72, unknown
21.4
1865
Male, age 51, unknown
20.4
2725
Female, age 75, unknown
20.3
1821
Female, age 72, unknown
19.7
2588
Male, age 74, left hemisphere
18.4
Substantia nigra nTPM: 21.9
2699
Male, age 18, unknown
26.6
2665
Male, age 74, both hemispheres
25.5
2590
Female, age 75, unknown
23.0
2241
Male, age 72, unknown
22.5
1941
Male, age 53, unknown
21.8
1916
Female, age 42, unknown
21.1
2583
Male, age 75, right hemisphere
20.5
1851
Male, age 51, unknown
20.0
1889
Female, age 72, unknown
19.9
2409
Female, age 72, unknown
17.8
Superior colliculus nTPM: 21.6
2664
Male, age 75, both hemispheres
25.0
2587
Male, age 74, left hemisphere
22.9
2087
Female, age 72, unknown
22.7
1839
Male, age 51, unknown
22.0
2668
Female, age 75, unknown
21.6
1995
Male, age 72, unknown
21.4
2261
Male, age 18, unknown
20.4
1913
Female, age 42, unknown
20.1
1796
Male, age 53, unknown
19.9
1895
Male, age 76, right hemisphere
19.8
Ventral tegmental area nTPM: 22.1
1942
Male, age 51, unknown
24.6
2218
Male, age 76, both hemispheres
23.1
2021
Male, age 53, unknown
22.5
1915
Female, age 42, unknown
22.2
2223
Female, age 72, unknown
21.6
2410
Female, age 72, unknown
18.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
6.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 6.5
Samples: 139
Max nTPM: 15.4
Min nTPM: 1.8
Std nTPM: 2.5
Median nTPM: 5.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
15.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
13.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
13.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
13.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
11.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
11.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
11.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
11.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
11.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
10.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
10.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
10.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
10.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
10.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
10.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
9.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
9.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
9.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
9.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
9.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
8.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
8.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
8.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
8.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
8.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
7.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
7.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
7.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
7.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
7.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
7.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
7.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
7.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
7.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
7.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
7.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
7.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
7.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
6.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
6.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
6.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
6.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
6.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
6.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
6.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
6.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
6.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
6.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
6.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
6.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
6.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
5.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
5.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
5.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
5.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
5.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
5.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
5.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
5.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
5.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
5.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
5.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
5.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
5.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
5.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
5.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
5.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
5.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
5.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
5.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
5.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
5.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
5.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
5.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
5.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
4.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
4.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
4.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
4.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
4.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
4.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
4.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
4.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
4.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
4.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
4.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
4.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
4.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
4.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
4.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
4.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
4.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
4.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
4.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
4.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
4.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
4.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
3.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
3.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
3.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
3.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
3.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
3.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
3.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
3.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
3.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
3.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
3.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
3.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
3.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 3.0
Samples: 4
Max nTPM: 3.8
Min nTPM: 2.5
Sample A
Male
2.9
Sample B
Male
3.8
Sample C
Female
2.5
Sample D
Female
2.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.