MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.8 nTPM
HPA Brain:27.2 nTPM
GTEx:54.8 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:73.1 nTPM
Mouse:135.2 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.3
1870 Female, age 42, unknown 24.6
2411 Female, age 72, unknown 24.3
1827 Male, age 72, unknown 24.2
2019 Male, age 18, unknown 23.0
1833 Male, age 53, unknown 22.1
2219 Male, age 76, both hemispheres 19.5
2586 Male, age 75, left hemisphere 19.4
2666 Male, age 74, left hemisphere 19.3
2828 Female, age 72, unknown 18.8
1830 Male, age 51, unknown 18.4
Dorsal raphe nucleus
nTPM: 25.5
2298 Female, age 72, unknown 33.6
2047 Male, age 72, unknown 25.1
2750 Male, age 76, both hemispheres 23.8
1828 Male, age 53, unknown 23.2
2016 Female, age 72, unknown 21.9
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 26.8
1848 Female, age 42, unknown 22.2
1890 Male, age 53, unknown 21.9
2849 Male, age 72, unknown 17.9
Median raphe nucleus
nTPM: 25.6
2220 Male, age 76, midline 25.6
Periaquaductal grey, anterior
nTPM: 27.1
2502 Female, age 75, unknown 29.3
1947 Male, age 18, unknown 29.0
1795 Male, age 51, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 21.9
2850 Male, age 76, both hemispheres 23.0
1840 Male, age 53, unknown 22.3
1831 Male, age 72, unknown 21.5
2464 Female, age 72, unknown 20.7
Periaquaductal grey, lateral
nTPM: 22.7
2053 Male, age 18, unknown 24.0
2272 Male, age 74, both hemispheres 22.7
2140 Male, age 76, both hemispheres 21.3
Pretectal area
nTPM: 24.8
1944 Female, age 72, unknown 30.0
2273 Male, age 74, both hemispheres 28.1
1816 Male, age 51, unknown 27.9
2224 Female, age 72, unknown 25.8
2007 Male, age 72, unknown 25.7
1815 Male, age 53, unknown 25.5
1817 Female, age 42, unknown 25.2
2667 Female, age 75, unknown 23.5
2825 Male, age 18, unknown 22.0
2316 Male, age 76, right hemisphere 20.8
2407 Male, age 75, both hemispheres 18.2
Red nucleus
nTPM: 21.3
1821 Female, age 72, unknown 30.3
2503 Female, age 72, unknown 22.7
1865 Male, age 51, unknown 22.6
1954 Female, age 42, unknown 22.1
1904 Male, age 53, unknown 21.8
2725 Female, age 75, unknown 21.0
2785 Male, age 18, unknown 20.2
2823 Male, age 76, right hemisphere 20.2
2588 Male, age 74, left hemisphere 19.9
2227 Male, age 72, unknown 19.2
2769 Male, age 72, unknown 18.1
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 27.2
2241 Male, age 72, unknown 41.4
1916 Female, age 42, unknown 32.4
1851 Male, age 51, unknown 30.0
1941 Male, age 53, unknown 29.7
1889 Female, age 72, unknown 28.9
2665 Male, age 74, both hemispheres 25.7
2699 Male, age 18, unknown 23.1
2590 Female, age 75, unknown 21.6
2583 Male, age 75, right hemisphere 19.9
2409 Female, age 72, unknown 19.4
Superior colliculus
nTPM: 22.4
2668 Female, age 75, unknown 26.5
2261 Male, age 18, unknown 24.1
2587 Male, age 74, left hemisphere 23.4
1895 Male, age 76, right hemisphere 23.1
2087 Female, age 72, unknown 23.1
1839 Male, age 51, unknown 22.4
1796 Male, age 53, unknown 21.9
1913 Female, age 42, unknown 21.6
2664 Male, age 75, both hemispheres 19.4
1995 Male, age 72, unknown 19.1
Ventral tegmental area
nTPM: 24.7
1915 Female, age 42, unknown 28.2
2410 Female, age 72, unknown 26.4
2218 Male, age 76, both hemispheres 25.0
1942 Male, age 51, unknown 24.1
2223 Female, age 72, unknown 23.2
2021 Male, age 53, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.8
Samples: 139

Max nTPM: 84.0
Min nTPM: 33.3
Std nTPM: 9.4
Median nTPM: 54.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 84.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 81.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 78.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 72.6
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 71.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 69.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 69.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.3
Samples: 4

Max nTPM: 84.6
Min nTPM: 59.3
Sample A Female 84.6
Sample B Female 66.7
Sample C Male 70.7
Sample D Male 59.3
Midbrain
nTPM: 71.5
Samples: 4

Max nTPM: 76.8
Min nTPM: 67.4
Sample A Female 76.8
Sample B Female 67.4
Sample C Male 71.9
Sample D Male 70.0
Periaqueductal gray
nTPM: 61.6
Samples: 3

Max nTPM: 67.4
Min nTPM: 54.7
Sample B Female 54.7
Sample C Male 67.4
Sample D Male 62.6
Superior colliculi
nTPM: 73.1
Samples: 4

Max nTPM: 79.7
Min nTPM: 68.6
Sample A Female 75.5
Sample B Female 68.7
Sample C Male 79.7
Sample D Male 68.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 135.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 135.2
Samples: 4

Max nTPM: 140.9
Min nTPM: 130.3
Sample A Male 140.9
Sample B Male 131.8
Sample C Female 137.7
Sample D Female 130.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
76097708 Antisense, RP_060626_01_C04, Mouse strain C57BL/6J (56 days, male) 5.0

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