MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.5 nTPM
HPA Brain:83.7 nTPM
GTEx:55.5 nTPM
FANTOM5:200.1 Scaled Tags Per Million
Pig:91.1 nTPM
Mouse:31.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 83.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.9
2019 Male, age 18, unknown 81.5
1870 Female, age 42, unknown 80.5
2411 Female, age 72, unknown 78.4
1833 Male, age 53, unknown 74.8
1830 Male, age 51, unknown 73.4
2828 Female, age 72, unknown 69.5
2219 Male, age 76, both hemispheres 68.7
1827 Male, age 72, unknown 66.6
2666 Male, age 74, left hemisphere 61.2
2586 Male, age 75, left hemisphere 54.5
Dorsal raphe nucleus
nTPM: 65.0
2750 Male, age 76, both hemispheres 78.1
2298 Female, age 72, unknown 70.9
2016 Female, age 72, unknown 63.7
1828 Male, age 53, unknown 59.6
2047 Male, age 72, unknown 52.5
Inferior colliculus
nTPM: 65.4
2097 Female, age 72, unknown 71.5
1848 Female, age 42, unknown 64.4
1890 Male, age 53, unknown 63.1
2849 Male, age 72, unknown 62.5
Median raphe nucleus
nTPM: 62.5
2220 Male, age 76, midline 62.5
Periaquaductal grey, anterior
nTPM: 65.0
2502 Female, age 75, unknown 73.3
1947 Male, age 18, unknown 66.2
1795 Male, age 51, unknown 55.4
Periaquaductal grey, dorsal
nTPM: 57.7
2464 Female, age 72, unknown 62.6
1831 Male, age 72, unknown 60.9
2850 Male, age 76, both hemispheres 55.4
1840 Male, age 53, unknown 51.8
Periaquaductal grey, lateral
nTPM: 54.5
2272 Male, age 74, both hemispheres 56.2
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 52.8
Pretectal area
nTPM: 70.4
1817 Female, age 42, unknown 81.8
2007 Male, age 72, unknown 81.0
1815 Male, age 53, unknown 80.9
2667 Female, age 75, unknown 75.5
2316 Male, age 76, right hemisphere 73.5
1816 Male, age 51, unknown 70.3
1944 Female, age 72, unknown 67.2
2224 Female, age 72, unknown 65.6
2825 Male, age 18, unknown 60.4
2273 Male, age 74, both hemispheres 59.9
2407 Male, age 75, both hemispheres 57.7
Red nucleus
nTPM: 83.7
1821 Female, age 72, unknown 104.8
1904 Male, age 53, unknown 94.6
2503 Female, age 72, unknown 90.9
2785 Male, age 18, unknown 89.7
1954 Female, age 42, unknown 88.7
1865 Male, age 51, unknown 87.8
2823 Male, age 76, right hemisphere 83.5
2227 Male, age 72, unknown 83.0
2769 Male, age 72, unknown 82.1
2588 Male, age 74, left hemisphere 72.1
2725 Female, age 75, unknown 69.3
2584 Male, age 75, left hemisphere 58.4
Substantia nigra
nTPM: 65.8
1889 Female, age 72, unknown 80.5
1851 Male, age 51, unknown 70.3
2409 Female, age 72, unknown 67.9
1941 Male, age 53, unknown 66.9
2699 Male, age 18, unknown 65.0
2590 Female, age 75, unknown 64.9
1916 Female, age 42, unknown 62.9
2241 Male, age 72, unknown 62.8
2583 Male, age 75, right hemisphere 59.8
2665 Male, age 74, both hemispheres 56.9
Superior colliculus
nTPM: 69.3
1913 Female, age 42, unknown 82.0
1895 Male, age 76, right hemisphere 80.8
1995 Male, age 72, unknown 79.4
2587 Male, age 74, left hemisphere 74.7
1839 Male, age 51, unknown 68.0
2668 Female, age 75, unknown 67.4
1796 Male, age 53, unknown 66.2
2087 Female, age 72, unknown 63.8
2261 Male, age 18, unknown 62.2
2664 Male, age 75, both hemispheres 48.7
Ventral tegmental area
nTPM: 65.6
2410 Female, age 72, unknown 72.5
2223 Female, age 72, unknown 68.7
1915 Female, age 42, unknown 65.0
1942 Male, age 51, unknown 64.5
2218 Male, age 76, both hemispheres 64.2
2021 Male, age 53, unknown 58.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.5
Samples: 139

Max nTPM: 93.2
Min nTPM: 32.6
Std nTPM: 12.0
Median nTPM: 53.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 93.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 88.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 87.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 87.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 86.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 81.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 81.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 79.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 77.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 200.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 200.1
FF:10158-103A5 76 years, female 200.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 91.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.1
Samples: 4

Max nTPM: 88.2
Min nTPM: 69.8
Sample A Female 88.2
Sample B Female 86.2
Sample C Male 80.0
Sample D Male 69.8
Midbrain
nTPM: 82.7
Samples: 4

Max nTPM: 99.6
Min nTPM: 67.9
Sample A Female 99.6
Sample B Female 67.9
Sample C Male 80.1
Sample D Male 83.1
Periaqueductal gray
nTPM: 66.8
Samples: 3

Max nTPM: 76.1
Min nTPM: 59.7
Sample B Female 64.7
Sample C Male 76.1
Sample D Male 59.7
Superior colliculi
nTPM: 91.1
Samples: 4

Max nTPM: 99.7
Min nTPM: 80.7
Sample A Female 96.6
Sample B Female 99.7
Sample C Male 87.4
Sample D Male 80.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.2
Samples: 4

Max nTPM: 32.6
Min nTPM: 29.3
Sample A Male 32.1
Sample B Male 32.6
Sample C Female 29.3
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
112204566 Antisense, RP_110421_01_C08, Mouse strain C57BL/6J (56 days, male) 1.5
76097716 Antisense, RP_060626_01_C12, Mouse strain C57BL/6J (56 days, male) 1.3

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