MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.8 nTPM
HPA Brain:16.1 nTPM
GTEx:7.8 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:34.0 nTPM
Mouse:5.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
2411 Female, age 72, unknown 17.1
2019 Male, age 18, unknown 16.4
1830 Male, age 51, unknown 15.9
1827 Male, age 72, unknown 15.7
1870 Female, age 42, unknown 14.8
2586 Male, age 75, left hemisphere 14.5
1833 Male, age 53, unknown 14.2
2828 Female, age 72, unknown 14.1
2219 Male, age 76, both hemispheres 13.9
2666 Male, age 74, left hemisphere 13.1
Dorsal raphe nucleus
nTPM: 15.6
2298 Female, age 72, unknown 17.3
2016 Female, age 72, unknown 15.9
2750 Male, age 76, both hemispheres 15.4
1828 Male, age 53, unknown 14.6
2047 Male, age 72, unknown 14.6
Inferior colliculus
nTPM: 14.0
2097 Female, age 72, unknown 15.4
1848 Female, age 42, unknown 13.5
1890 Male, age 53, unknown 13.5
2849 Male, age 72, unknown 13.5
Median raphe nucleus
nTPM: 15.6
2220 Male, age 76, midline 15.6
Periaquaductal grey, anterior
nTPM: 14.3
2502 Female, age 75, unknown 15.3
1947 Male, age 18, unknown 13.9
1795 Male, age 51, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 15.3
1840 Male, age 53, unknown 16.5
2850 Male, age 76, both hemispheres 15.6
2464 Female, age 72, unknown 15.3
1831 Male, age 72, unknown 13.7
Periaquaductal grey, lateral
nTPM: 15.5
2140 Male, age 76, both hemispheres 16.4
2272 Male, age 74, both hemispheres 15.3
2053 Male, age 18, unknown 14.7
Pretectal area
nTPM: 16.1
1944 Female, age 72, unknown 17.6
2667 Female, age 75, unknown 17.6
1815 Male, age 53, unknown 17.1
2273 Male, age 74, both hemispheres 16.2
2007 Male, age 72, unknown 16.1
2224 Female, age 72, unknown 16.0
2407 Male, age 75, both hemispheres 15.8
1817 Female, age 42, unknown 15.7
1816 Male, age 51, unknown 15.6
2825 Male, age 18, unknown 15.2
2316 Male, age 76, right hemisphere 14.0
Red nucleus
nTPM: 13.9
2584 Male, age 75, left hemisphere 15.8
1904 Male, age 53, unknown 15.3
1954 Female, age 42, unknown 15.3
2588 Male, age 74, left hemisphere 14.6
1865 Male, age 51, unknown 14.2
1821 Female, age 72, unknown 14.1
2823 Male, age 76, right hemisphere 14.1
2503 Female, age 72, unknown 14.0
2227 Male, age 72, unknown 13.6
2769 Male, age 72, unknown 13.6
2725 Female, age 75, unknown 11.2
2785 Male, age 18, unknown 11.1
Substantia nigra
nTPM: 15.2
2241 Male, age 72, unknown 19.0
1889 Female, age 72, unknown 17.4
1916 Female, age 42, unknown 15.9
2590 Female, age 75, unknown 15.9
1941 Male, age 53, unknown 15.6
1851 Male, age 51, unknown 15.4
2699 Male, age 18, unknown 13.5
2583 Male, age 75, right hemisphere 13.3
2409 Female, age 72, unknown 13.1
2665 Male, age 74, both hemispheres 12.6
Superior colliculus
nTPM: 14.7
2261 Male, age 18, unknown 21.0
2664 Male, age 75, both hemispheres 14.9
2087 Female, age 72, unknown 14.8
1895 Male, age 76, right hemisphere 14.7
2668 Female, age 75, unknown 14.5
1995 Male, age 72, unknown 13.8
1839 Male, age 51, unknown 13.7
1913 Female, age 42, unknown 13.7
2587 Male, age 74, left hemisphere 13.5
1796 Male, age 53, unknown 12.7
Ventral tegmental area
nTPM: 14.1
1942 Male, age 51, unknown 14.4
2021 Male, age 53, unknown 14.2
2218 Male, age 76, both hemispheres 14.1
2410 Female, age 72, unknown 14.1
1915 Female, age 42, unknown 14.0
2223 Female, age 72, unknown 14.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.8
Samples: 139

Max nTPM: 15.1
Min nTPM: 4.6
Std nTPM: 1.5
Median nTPM: 7.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 13.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 11.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 10.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 10.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 10.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 9.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 9.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 9.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 27.1
Sample A Female 36.9
Sample B Female 27.1
Sample C Male 35.7
Sample D Male 30.8
Midbrain
nTPM: 34.0
Samples: 4

Max nTPM: 36.8
Min nTPM: 31.8
Sample A Female 36.8
Sample B Female 33.9
Sample C Male 33.4
Sample D Male 31.8
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 31.0
Min nTPM: 29.4
Sample B Female 30.5
Sample C Male 29.4
Sample D Male 31.0
Superior colliculi
nTPM: 32.0
Samples: 4

Max nTPM: 35.5
Min nTPM: 26.1
Sample A Female 34.6
Sample B Female 26.1
Sample C Male 35.5
Sample D Male 31.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.7
Sample A Male 4.9
Sample B Male 5.6
Sample C Female 4.7
Sample D Female 5.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
79360251 Antisense, RP_071018_01_F01, Mouse strain C57BL/6J (56 days, male) 0.1

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