MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.1 nTPM
HPA Brain:48.0 nTPM
GTEx:56.1 nTPM
FANTOM5:73.7 Scaled Tags Per Million
Pig:58.3 nTPM
Mouse:86.7 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.1
1833 Male, age 53, unknown 47.0
2019 Male, age 18, unknown 46.0
2586 Male, age 75, left hemisphere 44.0
2411 Female, age 72, unknown 43.9
2666 Male, age 74, left hemisphere 43.7
1870 Female, age 42, unknown 42.7
2828 Female, age 72, unknown 41.9
1827 Male, age 72, unknown 39.7
1830 Male, age 51, unknown 38.4
2219 Male, age 76, both hemispheres 34.0
Dorsal raphe nucleus
nTPM: 44.7
2298 Female, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 45.7
2016 Female, age 72, unknown 45.2
1828 Male, age 53, unknown 44.5
2047 Male, age 72, unknown 41.7
Inferior colliculus
nTPM: 41.5
2097 Female, age 72, unknown 44.2
1890 Male, age 53, unknown 42.3
1848 Female, age 42, unknown 41.7
2849 Male, age 72, unknown 37.6
Median raphe nucleus
nTPM: 43.3
2220 Male, age 76, midline 43.3
Periaquaductal grey, anterior
nTPM: 41.5
2502 Female, age 75, unknown 45.4
1795 Male, age 51, unknown 39.9
1947 Male, age 18, unknown 39.1
Periaquaductal grey, dorsal
nTPM: 43.9
2850 Male, age 76, both hemispheres 47.2
1840 Male, age 53, unknown 44.5
2464 Female, age 72, unknown 42.1
1831 Male, age 72, unknown 41.8
Periaquaductal grey, lateral
nTPM: 43.0
2140 Male, age 76, both hemispheres 45.5
2053 Male, age 18, unknown 42.5
2272 Male, age 74, both hemispheres 41.0
Pretectal area
nTPM: 44.1
1817 Female, age 42, unknown 47.9
2667 Female, age 75, unknown 47.2
1944 Female, age 72, unknown 45.7
1816 Male, age 51, unknown 45.5
2273 Male, age 74, both hemispheres 45.4
1815 Male, age 53, unknown 44.6
2224 Female, age 72, unknown 44.2
2007 Male, age 72, unknown 43.2
2407 Male, age 75, both hemispheres 42.5
2316 Male, age 76, right hemisphere 40.5
2825 Male, age 18, unknown 38.5
Red nucleus
nTPM: 43.0
1954 Female, age 42, unknown 49.6
1821 Female, age 72, unknown 47.9
1865 Male, age 51, unknown 47.5
1904 Male, age 53, unknown 46.2
2785 Male, age 18, unknown 45.1
2725 Female, age 75, unknown 43.7
2227 Male, age 72, unknown 43.5
2769 Male, age 72, unknown 40.9
2823 Male, age 76, right hemisphere 40.0
2503 Female, age 72, unknown 38.8
2584 Male, age 75, left hemisphere 37.8
2588 Male, age 74, left hemisphere 35.1
Substantia nigra
nTPM: 48.0
2241 Male, age 72, unknown 61.8
1851 Male, age 51, unknown 52.2
2409 Female, age 72, unknown 52.0
1916 Female, age 42, unknown 51.3
2699 Male, age 18, unknown 50.4
1889 Female, age 72, unknown 46.0
1941 Male, age 53, unknown 43.3
2583 Male, age 75, right hemisphere 41.7
2665 Male, age 74, both hemispheres 41.0
2590 Female, age 75, unknown 40.5
Superior colliculus
nTPM: 42.9
1995 Male, age 72, unknown 45.1
2664 Male, age 75, both hemispheres 43.7
2587 Male, age 74, left hemisphere 43.0
2261 Male, age 18, unknown 42.9
1913 Female, age 42, unknown 42.8
2087 Female, age 72, unknown 42.8
1796 Male, age 53, unknown 42.6
1895 Male, age 76, right hemisphere 42.6
2668 Female, age 75, unknown 41.8
1839 Male, age 51, unknown 41.4
Ventral tegmental area
nTPM: 45.4
1915 Female, age 42, unknown 51.7
2410 Female, age 72, unknown 49.3
2218 Male, age 76, both hemispheres 45.3
2223 Female, age 72, unknown 44.7
1942 Male, age 51, unknown 42.1
2021 Male, age 53, unknown 39.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.1
Samples: 139

Max nTPM: 110.6
Min nTPM: 37.3
Std nTPM: 9.4
Median nTPM: 54.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 110.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 89.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 80.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 76.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 75.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 74.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 74.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 73.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 69.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 68.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.7
FF:10158-103A5 76 years, female 73.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 68.0
Min nTPM: 45.6
Sample A Female 68.0
Sample B Female 53.6
Sample C Male 50.4
Sample D Male 45.6
Midbrain
nTPM: 57.0
Samples: 4

Max nTPM: 71.9
Min nTPM: 50.5
Sample A Female 71.9
Sample B Female 51.9
Sample C Male 53.6
Sample D Male 50.5
Periaqueductal gray
nTPM: 49.8
Samples: 3

Max nTPM: 55.6
Min nTPM: 45.4
Sample B Female 48.5
Sample C Male 55.6
Sample D Male 45.4
Superior colliculi
nTPM: 58.3
Samples: 4

Max nTPM: 63.9
Min nTPM: 53.7
Sample A Female 63.9
Sample B Female 61.2
Sample C Male 54.3
Sample D Male 53.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 86.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 86.7
Samples: 4

Max nTPM: 91.3
Min nTPM: 82.6
Sample A Male 82.6
Sample B Male 85.4
Sample C Female 91.3
Sample D Female 87.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
385996 Antisense, RP_040625_01_G06, Mouse strain C57BL/6J (56 days, male) 3.9

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