MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.7 nTPM
HPA Brain:133.1 nTPM
GTEx:77.7 nTPM
FANTOM5:219.5 Scaled Tags Per Million
Pig:379.3 nTPM
Mouse:117.8 nTPM
Allen mouse:8.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 133.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.8
2411 Female, age 72, unknown 125.7
1870 Female, age 42, unknown 118.6
1830 Male, age 51, unknown 115.3
2019 Male, age 18, unknown 114.0
1833 Male, age 53, unknown 113.4
2828 Female, age 72, unknown 110.0
1827 Male, age 72, unknown 108.6
2586 Male, age 75, left hemisphere 107.6
2666 Male, age 74, left hemisphere 104.2
2219 Male, age 76, both hemispheres 100.2
Dorsal raphe nucleus
nTPM: 108.8
2750 Male, age 76, both hemispheres 124.8
2298 Female, age 72, unknown 118.4
1828 Male, age 53, unknown 104.0
2016 Female, age 72, unknown 99.6
2047 Male, age 72, unknown 97.1
Inferior colliculus
nTPM: 107.7
2097 Female, age 72, unknown 118.7
1848 Female, age 42, unknown 110.8
1890 Male, age 53, unknown 102.6
2849 Male, age 72, unknown 98.7
Median raphe nucleus
nTPM: 111.0
2220 Male, age 76, midline 111.0
Periaquaductal grey, anterior
nTPM: 133.1
2502 Female, age 75, unknown 145.6
1947 Male, age 18, unknown 134.8
1795 Male, age 51, unknown 118.9
Periaquaductal grey, dorsal
nTPM: 97.1
2464 Female, age 72, unknown 102.3
1840 Male, age 53, unknown 99.6
1831 Male, age 72, unknown 94.7
2850 Male, age 76, both hemispheres 92.0
Periaquaductal grey, lateral
nTPM: 97.5
2053 Male, age 18, unknown 101.1
2140 Male, age 76, both hemispheres 98.1
2272 Male, age 74, both hemispheres 93.4
Pretectal area
nTPM: 111.3
1944 Female, age 72, unknown 120.8
2007 Male, age 72, unknown 119.8
1816 Male, age 51, unknown 118.6
1817 Female, age 42, unknown 113.9
1815 Male, age 53, unknown 113.4
2224 Female, age 72, unknown 110.5
2667 Female, age 75, unknown 109.5
2316 Male, age 76, right hemisphere 107.2
2825 Male, age 18, unknown 104.7
2407 Male, age 75, both hemispheres 103.6
2273 Male, age 74, both hemispheres 102.1
Red nucleus
nTPM: 117.9
1821 Female, age 72, unknown 136.1
2503 Female, age 72, unknown 130.9
1865 Male, age 51, unknown 125.7
1904 Male, age 53, unknown 124.0
2227 Male, age 72, unknown 122.8
1954 Female, age 42, unknown 121.5
2785 Male, age 18, unknown 118.8
2769 Male, age 72, unknown 114.8
2823 Male, age 76, right hemisphere 110.0
2725 Female, age 75, unknown 108.3
2584 Male, age 75, left hemisphere 103.9
2588 Male, age 74, left hemisphere 97.5
Substantia nigra
nTPM: 120.3
2241 Male, age 72, unknown 146.9
1916 Female, age 42, unknown 134.7
1941 Male, age 53, unknown 130.3
2409 Female, age 72, unknown 127.7
1851 Male, age 51, unknown 123.7
1889 Female, age 72, unknown 120.6
2590 Female, age 75, unknown 108.1
2665 Male, age 74, both hemispheres 107.1
2699 Male, age 18, unknown 106.0
2583 Male, age 75, right hemisphere 98.0
Superior colliculus
nTPM: 112.4
2668 Female, age 75, unknown 124.2
2261 Male, age 18, unknown 122.9
1796 Male, age 53, unknown 116.6
2087 Female, age 72, unknown 115.2
1839 Male, age 51, unknown 111.3
1913 Female, age 42, unknown 111.3
1895 Male, age 76, right hemisphere 108.0
1995 Male, age 72, unknown 105.4
2664 Male, age 75, both hemispheres 104.8
2587 Male, age 74, left hemisphere 104.5
Ventral tegmental area
nTPM: 116.3
2410 Female, age 72, unknown 135.9
2223 Female, age 72, unknown 122.9
2218 Male, age 76, both hemispheres 117.1
1915 Female, age 42, unknown 116.6
1942 Male, age 51, unknown 106.3
2021 Male, age 53, unknown 98.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.7
Samples: 139

Max nTPM: 131.9
Min nTPM: 8.0
Std nTPM: 17.7
Median nTPM: 78.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 131.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 118.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 109.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 109.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 108.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 107.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 105.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 104.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 102.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 98.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.5
FF:10158-103A5 76 years, female 219.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 379.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 343.8
Samples: 4

Max nTPM: 378.8
Min nTPM: 299.7
Sample A Female 378.8
Sample B Female 299.7
Sample C Male 360.2
Sample D Male 336.5
Midbrain
nTPM: 379.3
Samples: 4

Max nTPM: 499.5
Min nTPM: 301.8
Sample A Female 499.5
Sample B Female 367.4
Sample C Male 348.4
Sample D Male 301.8
Periaqueductal gray
nTPM: 281.7
Samples: 3

Max nTPM: 318.3
Min nTPM: 242.6
Sample B Female 318.3
Sample C Male 284.1
Sample D Male 242.6
Superior colliculi
nTPM: 350.8
Samples: 4

Max nTPM: 381.4
Min nTPM: 290.1
Sample A Female 381.4
Sample B Female 290.1
Sample C Male 379.7
Sample D Male 351.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 119.6
Min nTPM: 116.3
Sample A Male 117.0
Sample B Male 118.3
Sample C Female 119.6
Sample D Female 116.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.1
100144441 Antisense, RP_110407_02_B12, Mouse strain C57BL/6J (56 days, male) 8.1

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