HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:11.0 nTPM
GTEx:12.0 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:11.2 nTPM
Mouse:18.2 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040119
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Hippocampus
nTPM: 10.0
1855 Male, age 76, left hemisphere 10.8
2148 Female, age 91, left hemisphere 10.8
2621 Female, age 67, right hemisphere 10.5
1898 Male, age 80, left hemisphere 10.4
1911 Female, age 85, right hemisphere 9.0
2529 Female, age 94, left hemisphere 8.7
Dentate gyrus
nTPM: 10.2
1927 Female, age 91, both hemispheres 12.5
2531 Female, age 67, both hemispheres 11.7
2528 Male, age 74, both hemispheres 10.6
2246 Female, age 85, both hemispheres 10.0
2530 Female, age 94, left hemisphere 8.7
2010 Male, age 76, both hemispheres 7.7
Entorhinal gyrus
nTPM: 9.4
1787 Male, age 76, left hemisphere 11.3
2613 Female, age 94, left hemisphere 10.1
2686 Male, age 75, right hemisphere 10.1
2764 Male, age 80, right hemisphere 10.0
1938 Female, age 85, left hemisphere 8.2
2117 Female, age 91, right hemisphere 6.7
Hippocampus, CA1
nTPM: 10.6
2045 Male, age 76, both hemispheres 11.5
2749 Male, age 80, left hemisphere 11.3
2527 Male, age 74, both hemispheres 11.0
1873 Female, age 85, both hemispheres 9.7
2082 Female, age 91, right hemisphere 9.7
Hippocampus, CA2
nTPM: 10.8
1892 Male, age 76, both hemispheres 12.4
2437 Female, age 94, left hemisphere 11.9
2113 Female, age 91, right hemisphere 11.1
1940 Female, age 85, left hemisphere 10.9
2249 Male, age 74, both hemispheres 9.6
1963 Male, age 80, left hemisphere 8.8
Hippocampus, CA3
nTPM: 11.0
1867 Male, age 76, both hemispheres 13.2
2137 Male, age 80, left hemisphere 12.0
1891 Female, age 85, both hemispheres 11.7
2620 Female, age 94, left hemisphere 10.9
2861 Female, age 67, both hemispheres 9.1
2436 Male, age 74, both hemispheres 8.9
Parahippocampal cortex
nTPM: 10.2
2250 Female, age 67, right hemisphere 11.8
2532 Female, age 72, left hemisphere 11.2
1990 Female, age 91, right hemisphere 10.7
2622 Female, age 67, right hemisphere 10.4
2693 Female, age 94, both hemispheres 10.3
1850 Male, age 80, both hemispheres 10.0
2245 Female, age 91, both hemispheres 10.0
2018 Male, age 76, both hemispheres 9.9
2692 Male, age 74, both hemispheres 9.8
1933 Female, age 85, both hemispheres 8.4
Perirhinal gyrus
nTPM: 10.0
2848 Male, age 76, right hemisphere 11.7
1841 Female, age 85, right hemisphere 10.6
2521 Female, age 94, right hemisphere 9.5
1847 Female, age 91, left hemisphere 9.3
1794 Male, age 80, right hemisphere 8.8
Subiculum
nTPM: 10.8
2729 Female, age 91, right hemisphere 11.9
2619 Male, age 74, both hemispheres 11.7
1901 Male, age 80, both hemispheres 11.5
2042 Male, age 76, both hemispheres 10.4
1977 Female, age 85, both hemispheres 10.3
2438 Female, age 94, left hemisphere 8.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 26.0
Min nTPM: 5.0
Std nTPM: 3.4
Median nTPM: 11.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 26.0
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 25.5
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 25.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 24.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 24.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 19.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 19.0
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 18.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 18.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 17.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 17.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 16.1
FF:10153-102I9 76 years, female 17.8
FF:10169-103B7 60 years, female 14.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.2
Pig sample Sample description nTPM
Subiculum
nTPM: 10.8
Samples: 4

Max nTPM: 13.0
Min nTPM: 9.5
Sample A Female 13.0
Sample B Female 9.5
Sample C Male 11.0
Sample D Male 9.5
Dorsal hippocampus
nTPM: 11.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.0
Sample A Female 11.8
Sample B Female 10.9
Sample C Male 11.3
Sample D Male 10.0
Entorhinal cortex
nTPM: 10.1
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.4
Sample A Female 11.6
Sample B Female 9.6
Sample C Male 9.6
Sample D Male 9.4
Ventral hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 8.5
Sample A Female 10.4
Sample B Female 8.5
Sample C Male 13.7
Sample D Male 12.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 16.3
Sample A Male 16.3
Sample B Male 16.8
Sample C Female 17.7
Sample D Female 17.9
Hippocampal formation
nTPM: 18.2
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.7
Sample A Male 17.4
Sample B Male 18.6
Sample C Female 20.2
Sample D Female 16.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
532574 Antisense, RP_040810_02_B08, Mouse strain C57BL/6J (56 days, male) 2.4

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