HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:64.6 nTPM
GTEx:9.8 nTPM
FANTOM5:71.0 Scaled Tags Per Million
Pig:80.2 nTPM
Mouse:86.0 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.6
Sample id Sample description nTPM
Hippocampus
nTPM: 47.3
2621 Female, age 67, right hemisphere 67.6
1855 Male, age 76, left hemisphere 54.7
1898 Male, age 80, left hemisphere 51.8
2148 Female, age 91, left hemisphere 51.4
1911 Female, age 85, right hemisphere 34.8
2529 Female, age 94, left hemisphere 23.3
Dentate gyrus
nTPM: 46.6
1927 Female, age 91, both hemispheres 63.0
2010 Male, age 76, both hemispheres 59.1
2530 Female, age 94, left hemisphere 47.6
2531 Female, age 67, both hemispheres 40.2
2246 Female, age 85, both hemispheres 37.8
2528 Male, age 74, both hemispheres 31.7
Entorhinal gyrus
nTPM: 33.6
1938 Female, age 85, left hemisphere 43.0
1787 Male, age 76, left hemisphere 37.5
2764 Male, age 80, right hemisphere 36.9
2613 Female, age 94, left hemisphere 35.6
2686 Male, age 75, right hemisphere 27.8
2117 Female, age 91, right hemisphere 21.0
Hippocampus, CA1
nTPM: 64.6
2749 Male, age 80, left hemisphere 120.4
1873 Female, age 85, both hemispheres 59.8
2082 Female, age 91, right hemisphere 50.2
2045 Male, age 76, both hemispheres 49.2
2527 Male, age 74, both hemispheres 43.6
Hippocampus, CA2
nTPM: 46.7
1963 Male, age 80, left hemisphere 91.7
1892 Male, age 76, both hemispheres 46.4
2113 Female, age 91, right hemisphere 43.7
2249 Male, age 74, both hemispheres 41.5
1940 Female, age 85, left hemisphere 29.6
2437 Female, age 94, left hemisphere 27.3
Hippocampus, CA3
nTPM: 39.5
2137 Male, age 80, left hemisphere 66.9
2861 Female, age 67, both hemispheres 58.5
2436 Male, age 74, both hemispheres 32.5
2620 Female, age 94, left hemisphere 32.1
1891 Female, age 85, both hemispheres 23.9
1867 Male, age 76, both hemispheres 23.2
Parahippocampal cortex
nTPM: 35.9
2245 Female, age 91, both hemispheres 59.3
2250 Female, age 67, right hemisphere 47.0
1933 Female, age 85, both hemispheres 42.1
2693 Female, age 94, both hemispheres 38.9
1990 Female, age 91, right hemisphere 37.8
1850 Male, age 80, both hemispheres 35.0
2622 Female, age 67, right hemisphere 27.2
2018 Male, age 76, both hemispheres 26.7
2532 Female, age 72, left hemisphere 26.0
2692 Male, age 74, both hemispheres 19.2
Perirhinal gyrus
nTPM: 48.9
1847 Female, age 91, left hemisphere 66.9
2521 Female, age 94, right hemisphere 65.9
1794 Male, age 80, right hemisphere 40.1
1841 Female, age 85, right hemisphere 36.3
2848 Male, age 76, right hemisphere 35.2
Subiculum
nTPM: 28.5
1977 Female, age 85, both hemispheres 36.8
2729 Female, age 91, right hemisphere 34.9
1901 Male, age 80, both hemispheres 31.0
2042 Male, age 76, both hemispheres 29.5
2438 Female, age 94, left hemisphere 19.5
2619 Male, age 74, both hemispheres 19.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.8
Samples: 197

Max nTPM: 49.7
Min nTPM: 1.3
Std nTPM: 7.6
Median nTPM: 7.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 49.7
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 32.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 32.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 32.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 31.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 30.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 29.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 27.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 26.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 26.2
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 25.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.0
FF:10169-103B7 60 years, female 93.4
FF:10153-102I9 76 years, female 48.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 80.2
Pig sample Sample description nTPM
Subiculum
nTPM: 77.6
Samples: 4

Max nTPM: 92.5
Min nTPM: 61.0
Sample A Female 92.5
Sample B Female 69.3
Sample C Male 87.5
Sample D Male 61.0
Dorsal hippocampus
nTPM: 74.8
Samples: 4

Max nTPM: 95.6
Min nTPM: 53.8
Sample A Female 89.7
Sample B Female 95.6
Sample C Male 53.8
Sample D Male 60.2
Entorhinal cortex
nTPM: 51.2
Samples: 4

Max nTPM: 66.4
Min nTPM: 39.8
Sample A Female 51.3
Sample B Female 39.8
Sample C Male 66.4
Sample D Male 47.3
Ventral hippocampus
nTPM: 80.2
Samples: 4

Max nTPM: 98.0
Min nTPM: 63.8
Sample A Female 68.5
Sample B Female 63.8
Sample C Male 90.6
Sample D Male 98.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 50.3
Samples: 4

Max nTPM: 60.5
Min nTPM: 39.5
Sample A Male 46.7
Sample B Male 39.5
Sample C Female 54.4
Sample D Female 60.5
Hippocampal formation
nTPM: 86.1
Samples: 4

Max nTPM: 113.1
Min nTPM: 65.9
Sample A Male 65.9
Sample B Male 92.7
Sample C Female 113.1
Sample D Female 72.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
69531055 Antisense, RP_050426_01_B07, Mouse strain C57BL/6J (56 days, male) 6.2
73992926 Antisense, RP_051214_03_C04, Mouse strain C57BL/6J (56 days, male) 4.0

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