MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.5 nTPM
HPA Brain:14.1 nTPM
GTEx:3.5 nTPM
FANTOM5:13.1 Scaled Tags Per Million
Pig:14.5 nTPM
Mouse:14.8 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
1830 Male, age 51, unknown 16.0
1870 Female, age 42, unknown 15.9
1833 Male, age 53, unknown 14.3
2411 Female, age 72, unknown 14.2
2019 Male, age 18, unknown 14.1
2586 Male, age 75, left hemisphere 13.2
2666 Male, age 74, left hemisphere 12.5
2828 Female, age 72, unknown 12.4
1827 Male, age 72, unknown 11.6
2219 Male, age 76, both hemispheres 8.4
Dorsal raphe nucleus
nTPM: 11.4
2750 Male, age 76, both hemispheres 14.5
2016 Female, age 72, unknown 12.2
1828 Male, age 53, unknown 11.8
2047 Male, age 72, unknown 10.6
2298 Female, age 72, unknown 8.2
Inferior colliculus
nTPM: 12.2
1848 Female, age 42, unknown 12.8
2097 Female, age 72, unknown 12.7
1890 Male, age 53, unknown 12.5
2849 Male, age 72, unknown 11.0
Median raphe nucleus
nTPM: 9.9
2220 Male, age 76, midline 9.9
Periaquaductal grey, anterior
nTPM: 11.8
2502 Female, age 75, unknown 13.5
1947 Male, age 18, unknown 12.3
1795 Male, age 51, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 11.4
2464 Female, age 72, unknown 12.7
1831 Male, age 72, unknown 11.9
1840 Male, age 53, unknown 10.8
2850 Male, age 76, both hemispheres 10.0
Periaquaductal grey, lateral
nTPM: 9.3
2053 Male, age 18, unknown 11.1
2272 Male, age 74, both hemispheres 8.7
2140 Male, age 76, both hemispheres 8.2
Pretectal area
nTPM: 11.1
2407 Male, age 75, both hemispheres 12.1
2007 Male, age 72, unknown 11.8
1817 Female, age 42, unknown 11.5
2825 Male, age 18, unknown 11.5
1815 Male, age 53, unknown 11.4
1944 Female, age 72, unknown 11.2
2667 Female, age 75, unknown 11.0
1816 Male, age 51, unknown 10.8
2224 Female, age 72, unknown 10.8
2316 Male, age 76, right hemisphere 10.7
2273 Male, age 74, both hemispheres 9.8
Red nucleus
nTPM: 14.1
1954 Female, age 42, unknown 16.8
1821 Female, age 72, unknown 16.2
1904 Male, age 53, unknown 15.3
2823 Male, age 76, right hemisphere 15.2
1865 Male, age 51, unknown 15.0
2503 Female, age 72, unknown 14.2
2227 Male, age 72, unknown 14.1
2769 Male, age 72, unknown 13.9
2584 Male, age 75, left hemisphere 13.4
2785 Male, age 18, unknown 13.0
2588 Male, age 74, left hemisphere 11.6
2725 Female, age 75, unknown 11.2
Substantia nigra
nTPM: 11.2
2409 Female, age 72, unknown 14.4
2241 Male, age 72, unknown 12.4
2583 Male, age 75, right hemisphere 12.4
1889 Female, age 72, unknown 11.7
1851 Male, age 51, unknown 10.5
2699 Male, age 18, unknown 10.5
1941 Male, age 53, unknown 10.4
2590 Female, age 75, unknown 10.4
2665 Male, age 74, both hemispheres 10.2
1916 Female, age 42, unknown 9.0
Superior colliculus
nTPM: 12.3
1913 Female, age 42, unknown 14.6
2668 Female, age 75, unknown 14.3
1895 Male, age 76, right hemisphere 13.3
1995 Male, age 72, unknown 13.2
1839 Male, age 51, unknown 12.5
2587 Male, age 74, left hemisphere 12.2
2664 Male, age 75, both hemispheres 12.0
1796 Male, age 53, unknown 11.0
2087 Female, age 72, unknown 10.0
2261 Male, age 18, unknown 10.0
Ventral tegmental area
nTPM: 11.5
2223 Female, age 72, unknown 14.6
2410 Female, age 72, unknown 11.8
1942 Male, age 51, unknown 11.3
2021 Male, age 53, unknown 10.7
2218 Male, age 76, both hemispheres 10.6
1915 Female, age 42, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.5
Samples: 139

Max nTPM: 6.6
Min nTPM: 1.9
Std nTPM: 0.8
Median nTPM: 3.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 6.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 5.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 5.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 5.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 5.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 5.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 5.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 5.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 5.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 5.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 5.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.1
FF:10158-103A5 76 years, female 13.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.8
Samples: 4

Max nTPM: 15.5
Min nTPM: 12.9
Sample A Female 13.5
Sample B Female 13.2
Sample C Male 12.9
Sample D Male 15.5
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 12.5
Sample A Female 17.5
Sample B Female 14.6
Sample C Male 12.5
Sample D Male 13.5
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 13.4
Min nTPM: 11.9
Sample B Female 13.3
Sample C Male 11.9
Sample D Male 13.4
Superior colliculi
nTPM: 12.1
Samples: 4

Max nTPM: 13.9
Min nTPM: 10.9
Sample A Female 11.7
Sample B Female 10.9
Sample C Male 12.0
Sample D Male 13.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.2
Sample A Male 13.2
Sample B Male 16.2
Sample C Female 14.8
Sample D Female 15.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
69407074 Antisense, RP_050412_02_G11, Mouse strain C57BL/6J (56 days, male) 1.2

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