MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:33.3 nTPM
GTEx:13.2 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:11.4 nTPM
Mouse:17.9 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.8
2586 Male, age 75, left hemisphere 26.9
2219 Male, age 76, both hemispheres 26.8
2828 Female, age 72, unknown 24.4
1833 Male, age 53, unknown 24.3
1870 Female, age 42, unknown 23.3
1827 Male, age 72, unknown 22.2
2411 Female, age 72, unknown 22.2
1830 Male, age 51, unknown 22.0
2019 Male, age 18, unknown 17.9
2666 Male, age 74, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 25.5
2016 Female, age 72, unknown 31.4
2298 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 27.0
1828 Male, age 53, unknown 23.0
2750 Male, age 76, both hemispheres 18.9
Inferior colliculus
nTPM: 25.3
2849 Male, age 72, unknown 29.5
2097 Female, age 72, unknown 24.5
1848 Female, age 42, unknown 23.6
1890 Male, age 53, unknown 23.5
Median raphe nucleus
nTPM: 24.0
2220 Male, age 76, midline 24.0
Periaquaductal grey, anterior
nTPM: 25.5
2502 Female, age 75, unknown 25.8
1795 Male, age 51, unknown 25.7
1947 Male, age 18, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 29.9
2850 Male, age 76, both hemispheres 37.2
1831 Male, age 72, unknown 28.8
2464 Female, age 72, unknown 26.9
1840 Male, age 53, unknown 26.6
Periaquaductal grey, lateral
nTPM: 33.3
2140 Male, age 76, both hemispheres 37.7
2272 Male, age 74, both hemispheres 34.4
2053 Male, age 18, unknown 27.9
Pretectal area
nTPM: 24.9
2273 Male, age 74, both hemispheres 37.7
2825 Male, age 18, unknown 31.7
2224 Female, age 72, unknown 30.2
2407 Male, age 75, both hemispheres 27.5
2316 Male, age 76, right hemisphere 26.4
2667 Female, age 75, unknown 22.1
1815 Male, age 53, unknown 20.9
1944 Female, age 72, unknown 20.1
1816 Male, age 51, unknown 19.6
1817 Female, age 42, unknown 19.5
2007 Male, age 72, unknown 18.7
Red nucleus
nTPM: 20.6
2785 Male, age 18, unknown 23.4
1904 Male, age 53, unknown 22.6
2769 Male, age 72, unknown 22.4
2227 Male, age 72, unknown 21.3
2725 Female, age 75, unknown 21.0
1865 Male, age 51, unknown 20.8
2584 Male, age 75, left hemisphere 20.8
1954 Female, age 42, unknown 20.1
2503 Female, age 72, unknown 19.6
2823 Male, age 76, right hemisphere 19.0
2588 Male, age 74, left hemisphere 18.5
1821 Female, age 72, unknown 17.8
Substantia nigra
nTPM: 20.2
2590 Female, age 75, unknown 23.1
2699 Male, age 18, unknown 23.0
2409 Female, age 72, unknown 22.6
1941 Male, age 53, unknown 21.4
1851 Male, age 51, unknown 21.2
1916 Female, age 42, unknown 21.0
1889 Female, age 72, unknown 17.8
2241 Male, age 72, unknown 17.4
2583 Male, age 75, right hemisphere 17.2
2665 Male, age 74, both hemispheres 17.2
Superior colliculus
nTPM: 23.1
2664 Male, age 75, both hemispheres 26.9
1995 Male, age 72, unknown 25.4
1839 Male, age 51, unknown 24.7
1796 Male, age 53, unknown 24.0
2087 Female, age 72, unknown 22.5
1913 Female, age 42, unknown 22.4
2587 Male, age 74, left hemisphere 22.2
2668 Female, age 75, unknown 21.3
1895 Male, age 76, right hemisphere 21.2
2261 Male, age 18, unknown 20.7
Ventral tegmental area
nTPM: 23.0
2021 Male, age 53, unknown 26.2
1942 Male, age 51, unknown 25.3
2218 Male, age 76, both hemispheres 22.5
2410 Female, age 72, unknown 22.1
1915 Female, age 42, unknown 21.6
2223 Female, age 72, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.2
Samples: 139

Max nTPM: 22.9
Min nTPM: 6.8
Std nTPM: 3.0
Median nTPM: 13.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 22.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 20.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 20.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 19.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.3
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 19.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 19.0
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 18.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.2
Sample A Female 9.2
Sample B Female 10.2
Sample C Male 10.9
Sample D Male 12.6
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.1
Sample A Female 13.5
Sample B Female 10.1
Sample C Male 11.0
Sample D Male 11.2
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 11.0
Min nTPM: 10.1
Sample B Female 10.1
Sample C Male 11.0
Sample D Male 10.6
Superior colliculi
nTPM: 10.5
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.1
Sample A Female 10.2
Sample B Female 9.1
Sample C Male 10.2
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 18.3
Min nTPM: 17.4
Sample A Male 17.6
Sample B Male 18.2
Sample C Female 18.3
Sample D Female 17.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
77454991 Antisense, RP_070129_01_E12, Mouse strain C57BL/6J (56 days, male) 2.0

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