MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:87.1 nTPM
GTEx:20.9 nTPM
FANTOM5:87.8 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:16.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.1
2586 Male, age 75, left hemisphere 68.8
2828 Female, age 72, unknown 67.7
1870 Female, age 42, unknown 60.9
1827 Male, age 72, unknown 53.8
2666 Male, age 74, left hemisphere 53.1
1833 Male, age 53, unknown 45.5
1830 Male, age 51, unknown 43.7
2411 Female, age 72, unknown 39.8
2219 Male, age 76, both hemispheres 25.3
2019 Male, age 18, unknown 22.7
Dorsal raphe nucleus
nTPM: 66.7
2016 Female, age 72, unknown 87.5
1828 Male, age 53, unknown 70.9
2047 Male, age 72, unknown 66.4
2298 Female, age 72, unknown 63.2
2750 Male, age 76, both hemispheres 45.4
Inferior colliculus
nTPM: 56.1
1848 Female, age 42, unknown 68.5
2849 Male, age 72, unknown 60.1
1890 Male, age 53, unknown 49.5
2097 Female, age 72, unknown 46.5
Median raphe nucleus
nTPM: 52.2
2220 Male, age 76, midline 52.2
Periaquaductal grey, anterior
nTPM: 61.4
1947 Male, age 18, unknown 67.7
1795 Male, age 51, unknown 67.5
2502 Female, age 75, unknown 49.0
Periaquaductal grey, dorsal
nTPM: 73.9
2850 Male, age 76, both hemispheres 92.3
1831 Male, age 72, unknown 74.0
1840 Male, age 53, unknown 73.0
2464 Female, age 72, unknown 56.2
Periaquaductal grey, lateral
nTPM: 87.1
2053 Male, age 18, unknown 106.2
2140 Male, age 76, both hemispheres 94.8
2272 Male, age 74, both hemispheres 60.3
Pretectal area
nTPM: 56.3
2825 Male, age 18, unknown 85.3
2273 Male, age 74, both hemispheres 77.7
2224 Female, age 72, unknown 69.9
2316 Male, age 76, right hemisphere 62.6
2667 Female, age 75, unknown 59.6
1944 Female, age 72, unknown 56.0
2407 Male, age 75, both hemispheres 47.8
1817 Female, age 42, unknown 44.1
1815 Male, age 53, unknown 43.2
1816 Male, age 51, unknown 42.7
2007 Male, age 72, unknown 29.9
Red nucleus
nTPM: 44.7
2725 Female, age 75, unknown 62.0
1954 Female, age 42, unknown 55.1
2769 Male, age 72, unknown 50.1
2503 Female, age 72, unknown 49.8
2227 Male, age 72, unknown 48.4
2823 Male, age 76, right hemisphere 47.3
1865 Male, age 51, unknown 43.7
1821 Female, age 72, unknown 42.1
1904 Male, age 53, unknown 41.1
2588 Male, age 74, left hemisphere 40.4
2584 Male, age 75, left hemisphere 33.1
2785 Male, age 18, unknown 23.5
Substantia nigra
nTPM: 52.6
2699 Male, age 18, unknown 93.0
1916 Female, age 42, unknown 62.6
2409 Female, age 72, unknown 52.4
1851 Male, age 51, unknown 51.6
2590 Female, age 75, unknown 49.4
1889 Female, age 72, unknown 45.2
1941 Male, age 53, unknown 45.0
2241 Male, age 72, unknown 44.9
2583 Male, age 75, right hemisphere 44.3
2665 Male, age 74, both hemispheres 37.2
Superior colliculus
nTPM: 55.5
1796 Male, age 53, unknown 67.4
1995 Male, age 72, unknown 66.2
2664 Male, age 75, both hemispheres 63.8
1913 Female, age 42, unknown 63.7
1839 Male, age 51, unknown 56.2
2587 Male, age 74, left hemisphere 52.9
2087 Female, age 72, unknown 49.4
2261 Male, age 18, unknown 49.2
2668 Female, age 75, unknown 44.6
1895 Male, age 76, right hemisphere 41.6
Ventral tegmental area
nTPM: 54.5
2021 Male, age 53, unknown 66.9
1942 Male, age 51, unknown 60.8
1915 Female, age 42, unknown 58.4
2218 Male, age 76, both hemispheres 55.3
2410 Female, age 72, unknown 46.7
2223 Female, age 72, unknown 38.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 76.8
Min nTPM: 1.3
Std nTPM: 13.5
Median nTPM: 17.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 76.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 74.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 65.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 60.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 54.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 48.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 47.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 46.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 46.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 45.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 87.8
FF:10158-103A5 76 years, female 87.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 31.7
Sample A Female 34.6
Sample B Female 31.7
Sample C Male 36.5
Sample D Male 38.1
Midbrain
nTPM: 40.3
Samples: 4

Max nTPM: 68.7
Min nTPM: 26.8
Sample A Female 68.7
Sample B Female 33.2
Sample C Male 32.6
Sample D Male 26.8
Periaqueductal gray
nTPM: 45.5
Samples: 3

Max nTPM: 46.9
Min nTPM: 43.0
Sample B Female 43.0
Sample C Male 46.5
Sample D Male 46.9
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 32.2
Min nTPM: 17.5
Sample A Female 29.6
Sample B Female 17.5
Sample C Male 31.6
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 14.2
Sample A Male 18.5
Sample B Male 18.2
Sample C Female 14.2
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71249068 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.4
69290417 Antisense, RP_050407_03_H09, Mouse strain C57BL/6J (56 days, male) 0.2

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