MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA Brain:60.4 nTPM
GTEx:70.3 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:7.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.6
2586 Male, age 75, left hemisphere 56.7
2411 Female, age 72, unknown 52.9
2666 Male, age 74, left hemisphere 51.8
1827 Male, age 72, unknown 51.3
2019 Male, age 18, unknown 48.8
1870 Female, age 42, unknown 47.9
1833 Male, age 53, unknown 45.6
2219 Male, age 76, both hemispheres 45.5
2828 Female, age 72, unknown 43.9
1830 Male, age 51, unknown 41.9
Dorsal raphe nucleus
nTPM: 51.1
1828 Male, age 53, unknown 56.4
2298 Female, age 72, unknown 53.7
2047 Male, age 72, unknown 51.4
2750 Male, age 76, both hemispheres 47.9
2016 Female, age 72, unknown 46.2
Inferior colliculus
nTPM: 47.4
2097 Female, age 72, unknown 53.4
1890 Male, age 53, unknown 51.4
2849 Male, age 72, unknown 42.7
1848 Female, age 42, unknown 42.1
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 53.3
1947 Male, age 18, unknown 56.7
2502 Female, age 75, unknown 52.0
1795 Male, age 51, unknown 51.1
Periaquaductal grey, dorsal
nTPM: 41.6
1840 Male, age 53, unknown 46.1
2850 Male, age 76, both hemispheres 43.5
1831 Male, age 72, unknown 39.8
2464 Female, age 72, unknown 36.9
Periaquaductal grey, lateral
nTPM: 39.8
2140 Male, age 76, both hemispheres 44.3
2272 Male, age 74, both hemispheres 37.9
2053 Male, age 18, unknown 37.3
Pretectal area
nTPM: 46.8
1817 Female, age 42, unknown 56.5
1816 Male, age 51, unknown 56.0
1944 Female, age 72, unknown 50.9
2007 Male, age 72, unknown 50.9
2667 Female, age 75, unknown 50.7
1815 Male, age 53, unknown 47.7
2224 Female, age 72, unknown 43.8
2825 Male, age 18, unknown 42.8
2273 Male, age 74, both hemispheres 41.4
2316 Male, age 76, right hemisphere 38.0
2407 Male, age 75, both hemispheres 36.4
Red nucleus
nTPM: 50.8
2725 Female, age 75, unknown 60.4
2503 Female, age 72, unknown 57.7
1821 Female, age 72, unknown 56.9
2588 Male, age 74, left hemisphere 54.8
2227 Male, age 72, unknown 50.9
1865 Male, age 51, unknown 49.8
1954 Female, age 42, unknown 49.5
2769 Male, age 72, unknown 49.3
2785 Male, age 18, unknown 48.2
1904 Male, age 53, unknown 48.0
2823 Male, age 76, right hemisphere 43.7
2584 Male, age 75, left hemisphere 40.0
Substantia nigra
nTPM: 60.4
1916 Female, age 42, unknown 84.2
2409 Female, age 72, unknown 68.6
2241 Male, age 72, unknown 66.1
1851 Male, age 51, unknown 65.0
2699 Male, age 18, unknown 63.7
2665 Male, age 74, both hemispheres 61.0
1941 Male, age 53, unknown 56.7
1889 Female, age 72, unknown 52.4
2590 Female, age 75, unknown 44.4
2583 Male, age 75, right hemisphere 42.1
Superior colliculus
nTPM: 42.8
2087 Female, age 72, unknown 49.6
1796 Male, age 53, unknown 46.0
2668 Female, age 75, unknown 44.7
2261 Male, age 18, unknown 44.5
1913 Female, age 42, unknown 42.9
2664 Male, age 75, both hemispheres 42.1
2587 Male, age 74, left hemisphere 41.2
1895 Male, age 76, right hemisphere 40.5
1839 Male, age 51, unknown 38.7
1995 Male, age 72, unknown 38.1
Ventral tegmental area
nTPM: 54.6
1915 Female, age 42, unknown 62.0
2410 Female, age 72, unknown 60.2
2218 Male, age 76, both hemispheres 59.5
1942 Male, age 51, unknown 55.0
2223 Female, age 72, unknown 48.5
2021 Male, age 53, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 139

Max nTPM: 109.2
Min nTPM: 40.1
Std nTPM: 13.2
Median nTPM: 68.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 109.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 106.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 104.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 103.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 97.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 95.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 93.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 88.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 87.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 87.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.4
FF:10158-103A5 76 years, female 59.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 16.6
Sample C Male 18.2
Sample D Male 19.9
Midbrain
nTPM: 16.7
Samples: 4

Max nTPM: 18.1
Min nTPM: 15.4
Sample A Female 15.9
Sample B Female 17.3
Sample C Male 15.4
Sample D Male 18.1
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 18.0
Min nTPM: 17.8
Sample B Female 18.0
Sample C Male 17.8
Sample D Male 17.8
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 17.0
Sample C Male 16.3
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.6
Sample A Male 7.0
Sample B Male 7.9
Sample C Female 5.6
Sample D Female 9.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75043152 Antisense, RP_060412_05_B03, Mouse strain C57BL/6J (56 days, male) 0.4
72001867 Antisense, RP_050915_02_D10, Mouse strain C57BL/6J (56 days, male) 0.0

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