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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2180.9
nTPM
Monaco:
971.3
nTPM
Schmiedel:
1373.2
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
2180.9
HPA sample
nTPM
gdT-cell nTPM: 520.8
Samples: 6
Max nTPM: 684.2
Min nTPM: 392.2
P10809_1007
546.8
P10809_1022
456.9
P10809_1041
584.1
P10809_1060
460.3
P10809_1077
392.2
P10809_1098
684.2
MAIT T-cell nTPM: 2180.9
Samples: 6
Max nTPM: 2640.0
Min nTPM: 1805.3
P10809_1006
1805.3
P10809_1024
2640.0
P10809_1043
1828.3
P10809_1062
2274.6
P10809_1083
2194.8
P10809_1097
2342.1
Memory CD4 T-cell nTPM: 308.2
Samples: 6
Max nTPM: 405.6
Min nTPM: 229.0
P10809_1014
231.1
P10809_1026
277.7
P10809_1045
369.9
P10809_1064
405.6
P10809_1086
336.0
P10809_1113
229.0
Memory CD8 T-cell nTPM: 346.0
Samples: 5
Max nTPM: 507.0
Min nTPM: 214.8
P10809_1012
301.8
P10809_1027
214.8
P10809_1046
507.0
P10809_1065
434.4
P10809_1111
271.8
Naive CD4 T-cell nTPM: 17.1
Samples: 6
Max nTPM: 64.4
Min nTPM: 2.2
P10809_1015
10.0
P10809_1030
6.6
P10809_1049
8.7
P10809_1068
10.6
P10809_1085
64.4
P10809_1112
2.2
Naive CD8 T-cell nTPM: 98.3
Samples: 6
Max nTPM: 361.5
Min nTPM: 9.6
P10809_1016
9.6
P10809_1031
34.6
P10809_1050
68.9
P10809_1069
103.1
P10809_1087
361.5
P10809_1110
12.2
T-reg nTPM: 78.1
Samples: 6
Max nTPM: 100.4
Min nTPM: 52.3
P10809_1018
67.5
P10809_1037
100.4
P10809_1056
79.2
P10809_1075
92.9
P10809_1094
76.5
P10809_1106
52.3
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
971.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 30.4
Samples: 4
Max nTPM: 43.1
Min nTPM: 21.2
RHH5202_R3573
31.6
RHH5230_R3602
21.2
RHH5259_R3631
25.8
RHH5288_R3660
43.1
Effector memory CD8 T-cell nTPM: 55.9
Samples: 4
Max nTPM: 87.8
Min nTPM: 31.7
RHH5203_R3574
38.5
RHH5231_R3603
87.8
RHH5260_R3632
31.7
RHH5289_R3661
65.4
MAIT T-cell nTPM: 971.3
Samples: 4
Max nTPM: 1220.1
Min nTPM: 705.6
RHH5233_R3605
1055.6
RHH5205_R3576
705.6
RHH5262_R3634
903.8
RHH5297_R3663
1220.1
Memory CD4 T-cell TFH nTPM: 193.6
Samples: 4
Max nTPM: 331.9
Min nTPM: 89.2
RHH5300_R3666
211.1
RHH5236_R3608
331.9
RHH5265_R3637
89.2
RHH5208_R3579
142.3
Memory CD4 T-cell Th1 nTPM: 96.6
Samples: 4
Max nTPM: 144.5
Min nTPM: 43.3
RHH5210_R3581
62.8
RHH5302_R3668
135.8
RHH5238_R3610
144.5
RHH5267_R3639
43.3
Memory CD4 T-cell Th1/Th17 nTPM: 237.4
Samples: 4
Max nTPM: 331.2
Min nTPM: 145.0
RHH5303_R3669
331.2
RHH5211_R3582
235.0
RHH5239_R3611
238.3
RHH5268_R3640
145.0
Memory CD4 T-cell Th17 nTPM: 203.7
Samples: 4
Max nTPM: 323.1
Min nTPM: 115.4
RHH5304_R3670
323.1
RHH5212_R3583
200.3
RHH5240_R3612
176.1
RHH5269_R3641
115.4
Memory CD4 T-cell Th2 nTPM: 49.7
Samples: 4
Max nTPM: 64.6
Min nTPM: 35.0
RHH5305_R3671
50.9
RHH5213_R3584
64.6
RHH5241_R3613
48.3
RHH5270_R3642
35.0
Naive CD4 T-cell nTPM: 8.0
Samples: 4
Max nTPM: 15.0
Min nTPM: 4.4
RHH5306_R3672
7.7
RHH5214_R3585
15.0
RHH5242_R3614
4.9
RHH5271_R3643
4.4
Naive CD8 T-cell nTPM: 0.7
Samples: 4
Max nTPM: 1.5
Min nTPM: 0.0
RHH5201_R3572
1.1
RHH5229_R3601
0.0
RHH5258_R3630
0.2
RHH5287_R3659
1.5
Non-Vd2 gdTCR nTPM: 160.9
Samples: 4
Max nTPM: 208.0
Min nTPM: 68.0
RHH5235_R3607
176.7
RHH5264_R3636
208.0
RHH5207_R3578
68.0
RHH5299_R3665
191.0
T-reg nTPM: 47.2
Samples: 4
Max nTPM: 71.8
Min nTPM: 30.1
RHH5301_R3667
49.7
RHH5237_R3609
71.8
RHH5266_R3638
30.1
RHH5209_R3580
37.1
Terminal effector memory CD4 T-cell nTPM: 22.6
Samples: 2
Max nTPM: 32.6
Min nTPM: 12.5
RHH5243_R3615
12.5
RHH5272_R3644
32.6
Terminal effector memory CD8 T-cell nTPM: 95.0
Samples: 4
Max nTPM: 161.1
Min nTPM: 19.2
RHH5232_R3604
113.5
RHH5204_R3575
161.1
RHH5261_R3633
19.2
RHH5296_R3662
86.0
Vd2 gdTCR nTPM: 462.6
Samples: 4
Max nTPM: 669.7
Min nTPM: 304.4
RHH5234_R3606
336.4
RHH5206_R3577
540.0
RHH5263_R3635
304.4
RHH5298_R3664
669.7
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
