HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:44.4 nTPM
HPA Brain:37.8 nTPM
GTEx:44.4 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:23.7 nTPM
Mouse:87.4 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028712Antibody HPA028713
Glial cells MediumLow
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.8
Sample id Sample description nTPM
Hippocampus
nTPM: 35.7
1898 Male, age 80, left hemisphere 45.4
2529 Female, age 94, left hemisphere 37.2
1855 Male, age 76, left hemisphere 36.0
1911 Female, age 85, right hemisphere 33.0
2621 Female, age 67, right hemisphere 32.7
2148 Female, age 91, left hemisphere 30.0
Dentate gyrus
nTPM: 34.5
2010 Male, age 76, both hemispheres 40.8
2530 Female, age 94, left hemisphere 39.5
1927 Female, age 91, both hemispheres 38.5
2246 Female, age 85, both hemispheres 31.9
2528 Male, age 74, both hemispheres 28.3
2531 Female, age 67, both hemispheres 28.1
Entorhinal gyrus
nTPM: 33.7
2117 Female, age 91, right hemisphere 40.0
1938 Female, age 85, left hemisphere 36.4
1787 Male, age 76, left hemisphere 35.2
2686 Male, age 75, right hemisphere 33.7
2764 Male, age 80, right hemisphere 29.0
2613 Female, age 94, left hemisphere 27.8
Hippocampus, CA1
nTPM: 36.2
2749 Male, age 80, left hemisphere 46.4
1873 Female, age 85, both hemispheres 37.6
2527 Male, age 74, both hemispheres 34.7
2045 Male, age 76, both hemispheres 34.0
2082 Female, age 91, right hemisphere 28.4
Hippocampus, CA2
nTPM: 37.8
1963 Male, age 80, left hemisphere 46.4
1892 Male, age 76, both hemispheres 41.8
2437 Female, age 94, left hemisphere 36.6
2249 Male, age 74, both hemispheres 36.3
1940 Female, age 85, left hemisphere 34.5
2113 Female, age 91, right hemisphere 31.0
Hippocampus, CA3
nTPM: 31.6
1867 Male, age 76, both hemispheres 40.3
1891 Female, age 85, both hemispheres 37.4
2137 Male, age 80, left hemisphere 35.7
2436 Male, age 74, both hemispheres 31.5
2861 Female, age 67, both hemispheres 22.9
2620 Female, age 94, left hemisphere 21.7
Parahippocampal cortex
nTPM: 33.1
2018 Male, age 76, both hemispheres 38.0
1850 Male, age 80, both hemispheres 36.4
1990 Female, age 91, right hemisphere 35.4
2245 Female, age 91, both hemispheres 34.1
1933 Female, age 85, both hemispheres 33.8
2250 Female, age 67, right hemisphere 33.6
2692 Male, age 74, both hemispheres 32.1
2532 Female, age 72, left hemisphere 31.0
2693 Female, age 94, both hemispheres 30.5
2622 Female, age 67, right hemisphere 26.1
Perirhinal gyrus
nTPM: 33.1
1841 Female, age 85, right hemisphere 36.6
1847 Female, age 91, left hemisphere 34.1
2521 Female, age 94, right hemisphere 32.9
1794 Male, age 80, right hemisphere 31.6
2848 Male, age 76, right hemisphere 30.2
Subiculum
nTPM: 36.7
1901 Male, age 80, both hemispheres 43.6
2042 Male, age 76, both hemispheres 39.7
1977 Female, age 85, both hemispheres 37.5
2438 Female, age 94, left hemisphere 36.6
2729 Female, age 91, right hemisphere 31.9
2619 Male, age 74, both hemispheres 30.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.4
Samples: 197

Max nTPM: 111.6
Min nTPM: 24.4
Std nTPM: 10.8
Median nTPM: 43.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 111.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 91.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 73.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 71.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 70.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 66.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 66.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 65.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 62.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 62.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 61.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.1
FF:10169-103B7 60 years, female 97.6
FF:10153-102I9 76 years, female 82.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.7
Pig sample Sample description nTPM
Subiculum
nTPM: 20.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.1
Sample A Female 22.9
Sample B Female 18.9
Sample C Male 17.1
Sample D Male 21.1
Dorsal hippocampus
nTPM: 23.7
Samples: 4

Max nTPM: 28.3
Min nTPM: 20.2
Sample A Female 28.3
Sample B Female 22.1
Sample C Male 24.3
Sample D Male 20.2
Entorhinal cortex
nTPM: 19.6
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.5
Sample A Female 20.8
Sample B Female 19.4
Sample C Male 19.8
Sample D Male 18.5
Ventral hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.0
Sample A Female 24.4
Sample B Female 18.1
Sample C Male 18.0
Sample D Male 20.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 87.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 76.6
Samples: 4

Max nTPM: 81.7
Min nTPM: 73.7
Sample A Male 74.3
Sample B Male 81.7
Sample C Female 76.6
Sample D Female 73.7
Hippocampal formation
nTPM: 87.4
Samples: 4

Max nTPM: 98.4
Min nTPM: 79.1
Sample A Male 98.4
Sample B Male 90.7
Sample C Female 81.4
Sample D Female 79.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
72000624 Antisense, RP_050915_02_D03, Mouse strain C57BL/6J (56 days, male) 1.3

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