MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:40.2 nTPM
GTEx:16.0 nTPM
FANTOM5:30.7 Scaled Tags Per Million
Pig:20.9 nTPM
Mouse:42.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2586 Male, age 75, left hemisphere 40.8
1870 Female, age 42, unknown 35.3
2411 Female, age 72, unknown 33.8
1833 Male, age 53, unknown 33.1
2666 Male, age 74, left hemisphere 33.1
2828 Female, age 72, unknown 32.8
1830 Male, age 51, unknown 32.5
2219 Male, age 76, both hemispheres 32.4
1827 Male, age 72, unknown 31.1
2019 Male, age 18, unknown 28.7
Dorsal raphe nucleus
nTPM: 40.1
2047 Male, age 72, unknown 47.8
2016 Female, age 72, unknown 39.8
2750 Male, age 76, both hemispheres 39.6
2298 Female, age 72, unknown 36.7
1828 Male, age 53, unknown 36.6
Inferior colliculus
nTPM: 33.9
1890 Male, age 53, unknown 35.0
2097 Female, age 72, unknown 34.6
1848 Female, age 42, unknown 34.4
2849 Male, age 72, unknown 31.4
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 34.2
1947 Male, age 18, unknown 36.6
2502 Female, age 75, unknown 33.5
1795 Male, age 51, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 32.7
1840 Male, age 53, unknown 35.7
2464 Female, age 72, unknown 33.7
2850 Male, age 76, both hemispheres 31.5
1831 Male, age 72, unknown 30.1
Periaquaductal grey, lateral
nTPM: 31.9
2053 Male, age 18, unknown 33.6
2140 Male, age 76, both hemispheres 31.9
2272 Male, age 74, both hemispheres 30.1
Pretectal area
nTPM: 29.6
2224 Female, age 72, unknown 35.2
2825 Male, age 18, unknown 35.0
2273 Male, age 74, both hemispheres 31.4
2407 Male, age 75, both hemispheres 31.1
2667 Female, age 75, unknown 31.0
1817 Female, age 42, unknown 29.4
2316 Male, age 76, right hemisphere 29.0
1815 Male, age 53, unknown 27.2
2007 Male, age 72, unknown 27.0
1944 Female, age 72, unknown 25.1
1816 Male, age 51, unknown 24.2
Red nucleus
nTPM: 33.8
1954 Female, age 42, unknown 38.0
2588 Male, age 74, left hemisphere 35.9
1821 Female, age 72, unknown 35.2
1904 Male, age 53, unknown 34.8
2227 Male, age 72, unknown 34.7
1865 Male, age 51, unknown 34.5
2769 Male, age 72, unknown 33.4
2725 Female, age 75, unknown 33.2
2584 Male, age 75, left hemisphere 32.7
2823 Male, age 76, right hemisphere 32.3
2785 Male, age 18, unknown 31.0
2503 Female, age 72, unknown 30.3
Substantia nigra
nTPM: 36.2
2241 Male, age 72, unknown 42.4
1916 Female, age 42, unknown 40.3
2699 Male, age 18, unknown 39.9
1851 Male, age 51, unknown 38.2
2583 Male, age 75, right hemisphere 36.1
1941 Male, age 53, unknown 35.8
2665 Male, age 74, both hemispheres 34.1
2409 Female, age 72, unknown 33.7
2590 Female, age 75, unknown 33.4
1889 Female, age 72, unknown 28.3
Superior colliculus
nTPM: 29.6
1839 Male, age 51, unknown 34.2
2664 Male, age 75, both hemispheres 33.1
2668 Female, age 75, unknown 31.3
1796 Male, age 53, unknown 30.7
1913 Female, age 42, unknown 29.7
2587 Male, age 74, left hemisphere 29.5
1895 Male, age 76, right hemisphere 28.8
1995 Male, age 72, unknown 27.9
2087 Female, age 72, unknown 26.2
2261 Male, age 18, unknown 24.9
Ventral tegmental area
nTPM: 35.5
1915 Female, age 42, unknown 37.6
1942 Male, age 51, unknown 36.7
2410 Female, age 72, unknown 36.4
2021 Male, age 53, unknown 34.9
2218 Male, age 76, both hemispheres 33.9
2223 Female, age 72, unknown 33.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 28.9
Min nTPM: 9.6
Std nTPM: 3.1
Median nTPM: 15.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 28.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 27.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 26.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 25.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 22.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 22.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 21.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 20.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 20.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 20.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.7
FF:10158-103A5 76 years, female 30.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 24.4
Min nTPM: 17.7
Sample A Female 18.8
Sample B Female 22.7
Sample C Male 17.7
Sample D Male 24.4
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 21.8
Min nTPM: 15.9
Sample A Female 21.8
Sample B Female 20.3
Sample C Male 15.9
Sample D Male 18.7
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 19.2
Min nTPM: 17.2
Sample B Female 19.2
Sample C Male 17.2
Sample D Male 18.1
Superior colliculi
nTPM: 20.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 21.3
Sample C Male 19.2
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 42.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 39.1
Sample A Male 39.1
Sample B Male 43.6
Sample C Female 43.6
Sample D Female 45.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69262333 Antisense, RP_050303_02_B03, Mouse strain C57BL/6J (56 days, male) 2.8

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