MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.7 nTPM
HPA Brain:66.6 nTPM
GTEx:32.7 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:52.3 nTPM
Mouse:147.7 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
2019 Male, age 18, unknown 69.2
2219 Male, age 76, both hemispheres 63.5
1827 Male, age 72, unknown 59.7
2666 Male, age 74, left hemisphere 56.9
2586 Male, age 75, left hemisphere 53.3
2828 Female, age 72, unknown 51.8
2411 Female, age 72, unknown 51.3
1833 Male, age 53, unknown 48.3
1830 Male, age 51, unknown 46.7
1870 Female, age 42, unknown 45.7
Dorsal raphe nucleus
nTPM: 52.2
2750 Male, age 76, both hemispheres 57.5
2298 Female, age 72, unknown 55.5
1828 Male, age 53, unknown 54.3
2047 Male, age 72, unknown 48.6
2016 Female, age 72, unknown 45.0
Inferior colliculus
nTPM: 54.8
2097 Female, age 72, unknown 62.1
1890 Male, age 53, unknown 53.9
1848 Female, age 42, unknown 52.8
2849 Male, age 72, unknown 50.5
Median raphe nucleus
nTPM: 56.2
2220 Male, age 76, midline 56.2
Periaquaductal grey, anterior
nTPM: 59.8
1947 Male, age 18, unknown 65.7
2502 Female, age 75, unknown 60.8
1795 Male, age 51, unknown 52.8
Periaquaductal grey, dorsal
nTPM: 48.0
2464 Female, age 72, unknown 52.0
1831 Male, age 72, unknown 50.7
1840 Male, age 53, unknown 45.8
2850 Male, age 76, both hemispheres 43.3
Periaquaductal grey, lateral
nTPM: 45.5
2272 Male, age 74, both hemispheres 51.1
2140 Male, age 76, both hemispheres 45.0
2053 Male, age 18, unknown 40.4
Pretectal area
nTPM: 64.7
1816 Male, age 51, unknown 87.9
1944 Female, age 72, unknown 85.3
1817 Female, age 42, unknown 81.8
2007 Male, age 72, unknown 81.3
1815 Male, age 53, unknown 66.9
2667 Female, age 75, unknown 64.1
2407 Male, age 75, both hemispheres 50.1
2273 Male, age 74, both hemispheres 49.5
2224 Female, age 72, unknown 49.0
2316 Male, age 76, right hemisphere 48.2
2825 Male, age 18, unknown 48.1
Red nucleus
nTPM: 52.4
1821 Female, age 72, unknown 61.6
2503 Female, age 72, unknown 57.0
2785 Male, age 18, unknown 57.0
2588 Male, age 74, left hemisphere 54.9
2725 Female, age 75, unknown 54.7
1904 Male, age 53, unknown 52.7
2823 Male, age 76, right hemisphere 51.4
1865 Male, age 51, unknown 51.0
1954 Female, age 42, unknown 48.1
2584 Male, age 75, left hemisphere 47.8
2227 Male, age 72, unknown 47.1
2769 Male, age 72, unknown 46.0
Substantia nigra
nTPM: 66.6
2409 Female, age 72, unknown 84.7
2241 Male, age 72, unknown 75.2
1941 Male, age 53, unknown 73.8
1916 Female, age 42, unknown 73.6
1889 Female, age 72, unknown 70.7
1851 Male, age 51, unknown 69.1
2665 Male, age 74, both hemispheres 58.4
2699 Male, age 18, unknown 57.7
2590 Female, age 75, unknown 52.0
2583 Male, age 75, right hemisphere 50.5
Superior colliculus
nTPM: 56.8
2087 Female, age 72, unknown 70.0
2668 Female, age 75, unknown 65.4
2261 Male, age 18, unknown 61.0
1895 Male, age 76, right hemisphere 60.4
1796 Male, age 53, unknown 60.0
2664 Male, age 75, both hemispheres 54.1
1839 Male, age 51, unknown 52.4
1913 Female, age 42, unknown 49.2
2587 Male, age 74, left hemisphere 48.4
1995 Male, age 72, unknown 47.4
Ventral tegmental area
nTPM: 59.4
2218 Male, age 76, both hemispheres 66.0
2410 Female, age 72, unknown 65.7
1915 Female, age 42, unknown 65.1
1942 Male, age 51, unknown 57.8
2021 Male, age 53, unknown 52.1
2223 Female, age 72, unknown 49.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.7
Samples: 139

Max nTPM: 82.6
Min nTPM: 14.7
Std nTPM: 15.2
Median nTPM: 26.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 82.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 82.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 81.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 60.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 59.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 59.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 56.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.9
Samples: 4

Max nTPM: 48.4
Min nTPM: 29.2
Sample A Female 48.4
Sample B Female 33.1
Sample C Male 40.7
Sample D Male 29.2
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 66.1
Min nTPM: 31.4
Sample A Female 31.4
Sample B Female 37.6
Sample C Male 66.1
Sample D Male 54.5
Periaqueductal gray
nTPM: 33.9
Samples: 3

Max nTPM: 36.9
Min nTPM: 31.5
Sample B Female 31.5
Sample C Male 36.9
Sample D Male 33.2
Superior colliculi
nTPM: 52.3
Samples: 4

Max nTPM: 62.7
Min nTPM: 40.8
Sample A Female 55.3
Sample B Female 40.8
Sample C Male 62.7
Sample D Male 50.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.7
Samples: 4

Max nTPM: 152.2
Min nTPM: 143.5
Sample A Male 151.4
Sample B Male 152.2
Sample C Female 143.6
Sample D Female 143.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
74800954 Antisense, RP_060315_02_A11, Mouse strain C57BL/6J (56 days, male) 10.2
68193058 Antisense, RP_040831_01_D05, Mouse strain C57BL/6J (56 days, male) 3.1

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