MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.8 nTPM
HPA Brain:4.9 nTPM
GTEx:2.8 nTPM
FANTOM5:9.8 Scaled Tags Per Million
Pig:16.5 nTPM
Mouse:9.7 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2411 Female, age 72, unknown 4.2
2219 Male, age 76, both hemispheres 4.1
1833 Male, age 53, unknown 4.0
1870 Female, age 42, unknown 3.7
2019 Male, age 18, unknown 3.7
1830 Male, age 51, unknown 3.6
2666 Male, age 74, left hemisphere 3.4
1827 Male, age 72, unknown 3.3
2586 Male, age 75, left hemisphere 3.1
2828 Female, age 72, unknown 2.8
Dorsal raphe nucleus
nTPM: 4.3
2047 Male, age 72, unknown 4.6
2298 Female, age 72, unknown 4.6
2016 Female, age 72, unknown 4.5
1828 Male, age 53, unknown 3.9
2750 Male, age 76, both hemispheres 3.8
Inferior colliculus
nTPM: 3.9
2097 Female, age 72, unknown 4.5
1890 Male, age 53, unknown 4.2
1848 Female, age 42, unknown 3.6
2849 Male, age 72, unknown 3.5
Median raphe nucleus
nTPM: 4.9
2220 Male, age 76, midline 4.9
Periaquaductal grey, anterior
nTPM: 4.2
2502 Female, age 75, unknown 5.0
1947 Male, age 18, unknown 4.4
1795 Male, age 51, unknown 3.3
Periaquaductal grey, dorsal
nTPM: 4.3
1840 Male, age 53, unknown 4.7
1831 Male, age 72, unknown 4.2
2464 Female, age 72, unknown 4.2
2850 Male, age 76, both hemispheres 4.1
Periaquaductal grey, lateral
nTPM: 3.5
2272 Male, age 74, both hemispheres 3.6
2140 Male, age 76, both hemispheres 3.5
2053 Male, age 18, unknown 3.3
Pretectal area
nTPM: 3.7
2667 Female, age 75, unknown 4.7
1944 Female, age 72, unknown 4.3
2224 Female, age 72, unknown 4.2
2273 Male, age 74, both hemispheres 4.2
2825 Male, age 18, unknown 3.7
2407 Male, age 75, both hemispheres 3.5
2007 Male, age 72, unknown 3.4
1817 Female, age 42, unknown 3.2
1815 Male, age 53, unknown 3.1
1816 Male, age 51, unknown 3.1
2316 Male, age 76, right hemisphere 2.7
Red nucleus
nTPM: 3.0
1821 Female, age 72, unknown 3.4
1954 Female, age 42, unknown 3.3
2584 Male, age 75, left hemisphere 3.2
1865 Male, age 51, unknown 3.1
2503 Female, age 72, unknown 3.1
2823 Male, age 76, right hemisphere 3.1
2588 Male, age 74, left hemisphere 3.0
1904 Male, age 53, unknown 2.9
2785 Male, age 18, unknown 2.9
2769 Male, age 72, unknown 2.8
2227 Male, age 72, unknown 2.7
2725 Female, age 75, unknown 2.6
Substantia nigra
nTPM: 4.3
2241 Male, age 72, unknown 5.8
1916 Female, age 42, unknown 5.1
1851 Male, age 51, unknown 4.8
1941 Male, age 53, unknown 4.7
2409 Female, age 72, unknown 4.5
2699 Male, age 18, unknown 4.4
1889 Female, age 72, unknown 4.0
2583 Male, age 75, right hemisphere 3.6
2590 Female, age 75, unknown 3.4
2665 Male, age 74, both hemispheres 3.1
Superior colliculus
nTPM: 3.5
2664 Male, age 75, both hemispheres 4.0
1839 Male, age 51, unknown 3.9
2087 Female, age 72, unknown 3.6
1995 Male, age 72, unknown 3.5
2587 Male, age 74, left hemisphere 3.5
1796 Male, age 53, unknown 3.4
1895 Male, age 76, right hemisphere 3.4
2261 Male, age 18, unknown 3.4
2668 Female, age 75, unknown 3.1
1913 Female, age 42, unknown 3.0
Ventral tegmental area
nTPM: 4.1
1942 Male, age 51, unknown 4.6
1915 Female, age 42, unknown 4.4
2218 Male, age 76, both hemispheres 4.1
2021 Male, age 53, unknown 3.9
2223 Female, age 72, unknown 3.9
2410 Female, age 72, unknown 3.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.8
Samples: 139

Max nTPM: 6.3
Min nTPM: 1.1
Std nTPM: 0.9
Median nTPM: 2.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 6.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 5.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 4.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 4.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 4.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.8
FF:10158-103A5 76 years, female 9.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.8
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.9
Sample A Female 11.9
Sample B Female 14.9
Sample C Male 17.3
Sample D Male 15.2
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 18.4
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 15.2
Sample C Male 18.4
Sample D Male 16.8
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 17.4
Min nTPM: 14.8
Sample B Female 17.4
Sample C Male 14.8
Sample D Male 17.4
Superior colliculi
nTPM: 12.8
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.9
Sample A Female 9.9
Sample B Female 12.7
Sample C Male 14.6
Sample D Male 14.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.3
Sample A Male 10.4
Sample B Male 9.7
Sample C Female 9.3
Sample D Female 9.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
70634296 Antisense, RP_050725_01_F01, Mouse strain C57BL/6J (56 days, male) 3.9
75694921 Antisense, RP_060518_04_A11, Mouse strain C57BL/6J (56 days, male) 0.6

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