MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.1 nTPM
HPA Brain:42.9 nTPM
GTEx:49.1 nTPM
FANTOM5:156.9 Scaled Tags Per Million
Pig:94.9 nTPM
Mouse:1.5 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.4
2411 Female, age 72, unknown 56.6
2019 Male, age 18, unknown 46.8
1830 Male, age 51, unknown 41.0
1870 Female, age 42, unknown 40.3
1833 Male, age 53, unknown 33.9
1827 Male, age 72, unknown 29.2
2219 Male, age 76, both hemispheres 27.3
2828 Female, age 72, unknown 24.4
2586 Male, age 75, left hemisphere 22.6
2666 Male, age 74, left hemisphere 21.5
Dorsal raphe nucleus
nTPM: 34.7
2750 Male, age 76, both hemispheres 44.7
1828 Male, age 53, unknown 33.2
2298 Female, age 72, unknown 32.7
2047 Male, age 72, unknown 32.2
2016 Female, age 72, unknown 30.8
Inferior colliculus
nTPM: 34.3
2097 Female, age 72, unknown 41.9
1848 Female, age 42, unknown 33.6
1890 Male, age 53, unknown 32.9
2849 Male, age 72, unknown 29.0
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 33.6
2502 Female, age 75, unknown 42.2
1947 Male, age 18, unknown 30.3
1795 Male, age 51, unknown 28.1
Periaquaductal grey, dorsal
nTPM: 30.0
2464 Female, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 33.8
1840 Male, age 53, unknown 26.0
1831 Male, age 72, unknown 23.8
Periaquaductal grey, lateral
nTPM: 29.2
2140 Male, age 76, both hemispheres 35.2
2053 Male, age 18, unknown 31.6
2272 Male, age 74, both hemispheres 20.8
Pretectal area
nTPM: 29.9
2007 Male, age 72, unknown 41.0
1944 Female, age 72, unknown 35.6
1815 Male, age 53, unknown 34.6
1816 Male, age 51, unknown 34.5
1817 Female, age 42, unknown 32.2
2224 Female, age 72, unknown 32.1
2273 Male, age 74, both hemispheres 29.8
2825 Male, age 18, unknown 28.6
2316 Male, age 76, right hemisphere 28.4
2667 Female, age 75, unknown 17.8
2407 Male, age 75, both hemispheres 14.7
Red nucleus
nTPM: 35.7
1821 Female, age 72, unknown 51.2
1865 Male, age 51, unknown 44.6
1904 Male, age 53, unknown 39.6
2503 Female, age 72, unknown 37.8
1954 Female, age 42, unknown 36.6
2785 Male, age 18, unknown 35.4
2725 Female, age 75, unknown 34.9
2769 Male, age 72, unknown 31.9
2588 Male, age 74, left hemisphere 31.7
2584 Male, age 75, left hemisphere 29.5
2823 Male, age 76, right hemisphere 27.5
2227 Male, age 72, unknown 27.3
Substantia nigra
nTPM: 39.7
2241 Male, age 72, unknown 64.5
2409 Female, age 72, unknown 58.1
2590 Female, age 75, unknown 44.1
1916 Female, age 42, unknown 43.2
1941 Male, age 53, unknown 39.0
1851 Male, age 51, unknown 36.1
2583 Male, age 75, right hemisphere 35.9
1889 Female, age 72, unknown 27.9
2699 Male, age 18, unknown 27.9
2665 Male, age 74, both hemispheres 20.6
Superior colliculus
nTPM: 28.4
2587 Male, age 74, left hemisphere 42.1
1913 Female, age 42, unknown 33.7
2668 Female, age 75, unknown 30.2
1895 Male, age 76, right hemisphere 28.5
1995 Male, age 72, unknown 28.1
2087 Female, age 72, unknown 27.2
1796 Male, age 53, unknown 25.9
2261 Male, age 18, unknown 25.9
1839 Male, age 51, unknown 24.4
2664 Male, age 75, both hemispheres 18.5
Ventral tegmental area
nTPM: 42.9
2410 Female, age 72, unknown 61.4
2223 Female, age 72, unknown 55.3
2021 Male, age 53, unknown 37.8
2218 Male, age 76, both hemispheres 36.9
1915 Female, age 42, unknown 35.4
1942 Male, age 51, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.1
Samples: 139

Max nTPM: 107.0
Min nTPM: 28.7
Std nTPM: 12.7
Median nTPM: 45.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 107.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 78.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 74.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 71.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 69.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 69.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 68.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.9
FF:10158-103A5 76 years, female 156.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 110.4
Min nTPM: 76.7
Sample A Female 110.4
Sample B Female 76.7
Sample C Male 93.4
Sample D Male 82.4
Midbrain
nTPM: 94.9
Samples: 4

Max nTPM: 114.6
Min nTPM: 73.9
Sample A Female 114.6
Sample B Female 98.2
Sample C Male 92.9
Sample D Male 73.9
Periaqueductal gray
nTPM: 77.4
Samples: 3

Max nTPM: 83.5
Min nTPM: 72.6
Sample B Female 76.0
Sample C Male 83.5
Sample D Male 72.6
Superior colliculi
nTPM: 85.8
Samples: 4

Max nTPM: 95.8
Min nTPM: 77.6
Sample A Female 95.8
Sample B Female 77.6
Sample C Male 90.7
Sample D Male 78.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.0
Sample A Male 2.0
Sample B Male 1.0
Sample C Female 1.2
Sample D Female 1.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
75079765 Antisense, RP_060412_02_F03, Mouse strain C57BL/6J (56 days, male) 5.8
69014440 Antisense, RP_050310_01_B03, Mouse strain C57BL/6J (56 days, male) 3.0
Midbrain
Expression energy: 4.4
75079765 Antisense, RP_060412_02_F03, Mouse strain C57BL/6J (56 days, male) 5.8
69014440 Antisense, RP_050310_01_B03, Mouse strain C57BL/6J (56 days, male) 3.0

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