MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:3.8 nTPM
GTEx:16.0 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:0.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.7
2219 Male, age 76, both hemispheres 6.5
2411 Female, age 72, unknown 3.3
1830 Male, age 51, unknown 2.8
1833 Male, age 53, unknown 2.7
1827 Male, age 72, unknown 2.6
2828 Female, age 72, unknown 2.6
1870 Female, age 42, unknown 2.2
2019 Male, age 18, unknown 1.8
2586 Male, age 75, left hemisphere 1.3
2666 Male, age 74, left hemisphere 0.9
Dorsal raphe nucleus
nTPM: 2.8
2750 Male, age 76, both hemispheres 3.6
2298 Female, age 72, unknown 3.5
2016 Female, age 72, unknown 2.8
1828 Male, age 53, unknown 2.2
2047 Male, age 72, unknown 1.9
Inferior colliculus
nTPM: 2.5
1890 Male, age 53, unknown 3.3
2849 Male, age 72, unknown 3.0
2097 Female, age 72, unknown 2.1
1848 Female, age 42, unknown 1.5
Median raphe nucleus
nTPM: 2.0
2220 Male, age 76, midline 2.0
Periaquaductal grey, anterior
nTPM: 3.8
2502 Female, age 75, unknown 5.2
1795 Male, age 51, unknown 3.4
1947 Male, age 18, unknown 2.9
Periaquaductal grey, dorsal
nTPM: 2.9
2850 Male, age 76, both hemispheres 3.6
2464 Female, age 72, unknown 3.3
1831 Male, age 72, unknown 2.7
1840 Male, age 53, unknown 2.1
Periaquaductal grey, lateral
nTPM: 2.8
2140 Male, age 76, both hemispheres 3.3
2053 Male, age 18, unknown 2.5
2272 Male, age 74, both hemispheres 2.5
Pretectal area
nTPM: 2.3
2825 Male, age 18, unknown 3.1
2007 Male, age 72, unknown 2.9
2667 Female, age 75, unknown 2.7
2273 Male, age 74, both hemispheres 2.5
2316 Male, age 76, right hemisphere 2.3
1817 Female, age 42, unknown 2.2
1815 Male, age 53, unknown 2.1
1816 Male, age 51, unknown 2.0
2224 Female, age 72, unknown 2.0
1944 Female, age 72, unknown 1.8
2407 Male, age 75, both hemispheres 1.5
Red nucleus
nTPM: 3.0
2588 Male, age 74, left hemisphere 4.3
2823 Male, age 76, right hemisphere 3.7
2227 Male, age 72, unknown 3.4
1904 Male, age 53, unknown 3.3
2503 Female, age 72, unknown 3.2
1954 Female, age 42, unknown 3.1
2584 Male, age 75, left hemisphere 3.0
2769 Male, age 72, unknown 2.9
1865 Male, age 51, unknown 2.8
1821 Female, age 72, unknown 2.6
2725 Female, age 75, unknown 2.6
2785 Male, age 18, unknown 1.2
Substantia nigra
nTPM: 3.2
2699 Male, age 18, unknown 7.4
2665 Male, age 74, both hemispheres 4.7
2409 Female, age 72, unknown 4.4
2241 Male, age 72, unknown 3.0
1941 Male, age 53, unknown 2.6
2590 Female, age 75, unknown 2.4
1851 Male, age 51, unknown 2.1
1889 Female, age 72, unknown 1.9
2583 Male, age 75, right hemisphere 1.7
1916 Female, age 42, unknown 1.6
Superior colliculus
nTPM: 2.5
2664 Male, age 75, both hemispheres 4.0
1839 Male, age 51, unknown 3.2
1895 Male, age 76, right hemisphere 2.7
2587 Male, age 74, left hemisphere 2.7
2261 Male, age 18, unknown 2.6
1913 Female, age 42, unknown 2.3
2087 Female, age 72, unknown 2.0
1796 Male, age 53, unknown 1.9
2668 Female, age 75, unknown 1.9
1995 Male, age 72, unknown 1.8
Ventral tegmental area
nTPM: 2.4
2223 Female, age 72, unknown 3.4
2021 Male, age 53, unknown 3.3
1942 Male, age 51, unknown 2.6
2218 Male, age 76, both hemispheres 2.6
1915 Female, age 42, unknown 1.5
2410 Female, age 72, unknown 1.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 61.8
Min nTPM: 1.5
Std nTPM: 9.2
Median nTPM: 13.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 61.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 43.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 41.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 38.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 38.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 37.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 36.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 30.5
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 29.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 29.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 1.8
Sample A Female 3.0
Sample B Female 1.8
Sample C Male 3.3
Sample D Male 7.9
Midbrain
nTPM: 4.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 1.1
Sample A Female 2.7
Sample B Female 1.1
Sample C Male 5.4
Sample D Male 7.5
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 4.6
Min nTPM: 0.8
Sample B Female 0.8
Sample C Male 4.6
Sample D Male 3.3
Superior colliculi
nTPM: 5.1
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 5.9
Sample C Male 4.7
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.3
Sample D Female 0.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68745528 Antisense, RP_050210_02_B04, Mouse strain C57BL/6J (56 days, male) 0.4
71064061 Antisense, RP_050725_03_C10, Mouse strain C57BL/6J (56 days, male) 0.2

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