HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		62.647
RNA expressioni
Consensus:99.0 nTPM
HPA Brain:181.9 nTPM
GTEx:99.0 nTPM
FANTOM5:345.4 Scaled Tags Per Million
Pig:200.3 nTPM
Mouse:262.6 nTPM
Allen mouse:21.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004105Antibody CAB022161
Glial cells Not detectedMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA004105
Hippocampal formation mean intensity 62.647
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 36.965
Molecular layer of the dentate gyrus 41.287
Granular dentate gyrus 27.189
CA1 - oriens layer 61.005
CA1 - pyramidal layer 41.666
CA1 - radiatum layer 60.449
CA2 - oriens layer 60.656
CA2 - pyramidal layer 42.815
CA2 - radiatum layer 62.647
CA3 - oriens layer 44.087
CA3 - pyramidal layer 24.092
CA3 - radiatum layer 54.180
Stratum lucidum 46.261
Lacunosum moleculare 48.940
Subiculum 34.670

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 181.9
Sample id Sample description nTPM
Hippocampus
nTPM: 138.8
2621 Female, age 67, right hemisphere 165.1
1898 Male, age 80, left hemisphere 162.8
1855 Male, age 76, left hemisphere 156.1
1911 Female, age 85, right hemisphere 136.8
2148 Female, age 91, left hemisphere 132.7
2529 Female, age 94, left hemisphere 79.0
Dentate gyrus
nTPM: 150.4
1927 Female, age 91, both hemispheres 210.5
2010 Male, age 76, both hemispheres 162.2
2530 Female, age 94, left hemisphere 148.3
2531 Female, age 67, both hemispheres 146.9
2246 Female, age 85, both hemispheres 129.0
2528 Male, age 74, both hemispheres 105.6
Entorhinal gyrus
nTPM: 106.1
2613 Female, age 94, left hemisphere 134.3
1787 Male, age 76, left hemisphere 127.6
2764 Male, age 80, right hemisphere 121.7
1938 Female, age 85, left hemisphere 109.7
2686 Male, age 75, right hemisphere 82.9
2117 Female, age 91, right hemisphere 60.1
Hippocampus, CA1
nTPM: 181.9
2749 Male, age 80, left hemisphere 403.2
1873 Female, age 85, both hemispheres 181.4
2527 Male, age 74, both hemispheres 125.4
2045 Male, age 76, both hemispheres 119.3
2082 Female, age 91, right hemisphere 80.4
Hippocampus, CA2
nTPM: 135.4
1892 Male, age 76, both hemispheres 226.0
1963 Male, age 80, left hemisphere 185.1
2249 Male, age 74, both hemispheres 117.5
1940 Female, age 85, left hemisphere 104.7
2437 Female, age 94, left hemisphere 91.9
2113 Female, age 91, right hemisphere 87.4
Hippocampus, CA3
nTPM: 168.1
2137 Male, age 80, left hemisphere 338.4
2620 Female, age 94, left hemisphere 194.2
1867 Male, age 76, both hemispheres 150.2
2861 Female, age 67, both hemispheres 127.6
2436 Male, age 74, both hemispheres 100.4
1891 Female, age 85, both hemispheres 98.0
Parahippocampal cortex
nTPM: 121.9
2245 Female, age 91, both hemispheres 181.2
1850 Male, age 80, both hemispheres 144.6
2693 Female, age 94, both hemispheres 140.8
2250 Female, age 67, right hemisphere 132.7
2532 Female, age 72, left hemisphere 126.7
1933 Female, age 85, both hemispheres 114.8
2622 Female, age 67, right hemisphere 112.4
2018 Male, age 76, both hemispheres 106.7
1990 Female, age 91, right hemisphere 98.9
2692 Male, age 74, both hemispheres 59.6
Perirhinal gyrus
nTPM: 154.2
2521 Female, age 94, right hemisphere 179.0
1794 Male, age 80, right hemisphere 164.0
1841 Female, age 85, right hemisphere 143.9
2848 Male, age 76, right hemisphere 142.7
1847 Female, age 91, left hemisphere 141.5
Subiculum
nTPM: 100.6
1901 Male, age 80, both hemispheres 163.3
2042 Male, age 76, both hemispheres 114.1
1977 Female, age 85, both hemispheres 106.7
2438 Female, age 94, left hemisphere 80.5
2729 Female, age 91, right hemisphere 76.4
2619 Male, age 74, both hemispheres 62.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 99.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 99.0
Samples: 197

Max nTPM: 313.4
Min nTPM: 13.1
Std nTPM: 64.5
Median nTPM: 87.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 313.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 270.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 267.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 259.8
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 258.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 255.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 249.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 247.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 241.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 237.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 229.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 345.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 345.4
FF:10169-103B7 60 years, female 544.2
FF:10153-102I9 76 years, female 146.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 200.3
Pig sample Sample description nTPM
Subiculum
nTPM: 130.5
Samples: 4

Max nTPM: 160.4
Min nTPM: 112.4
Sample A Female 160.4
Sample B Female 114.8
Sample C Male 134.2
Sample D Male 112.4
Dorsal hippocampus
nTPM: 200.3
Samples: 4

Max nTPM: 235.5
Min nTPM: 146.2
Sample A Female 235.5
Sample B Female 213.8
Sample C Male 146.2
Sample D Male 205.7
Entorhinal cortex
nTPM: 133.5
Samples: 4

Max nTPM: 156.9
Min nTPM: 120.3
Sample A Female 156.9
Sample B Female 120.3
Sample C Male 127.5
Sample D Male 129.4
Ventral hippocampus
nTPM: 152.2
Samples: 4

Max nTPM: 218.5
Min nTPM: 112.8
Sample A Female 138.9
Sample B Female 112.8
Sample C Male 138.4
Sample D Male 218.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 262.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 158.3
Samples: 4

Max nTPM: 182.1
Min nTPM: 139.4
Sample A Male 150.6
Sample B Male 139.4
Sample C Female 160.9
Sample D Female 182.1
Hippocampal formation
nTPM: 262.7
Samples: 4

Max nTPM: 302.3
Min nTPM: 219.1
Sample A Male 234.7
Sample B Male 294.5
Sample C Female 302.3
Sample D Female 219.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 21.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.7
69059954 Antisense, RP_050317_04_G02, Mouse strain C57BL/6J (56 days, male) 21.7

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