MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1499.6 nTPM
HPA Brain:418.8 nTPM
GTEx:1499.6 nTPM
FANTOM5:523.9 Scaled Tags Per Million
Pig:434.0 nTPM
Mouse:465.4 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 418.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 338.5
2666 Male, age 74, left hemisphere 421.2
2411 Female, age 72, unknown 380.2
1870 Female, age 42, unknown 363.3
2586 Male, age 75, left hemisphere 362.0
2828 Female, age 72, unknown 359.3
1833 Male, age 53, unknown 313.9
1827 Male, age 72, unknown 312.6
1830 Male, age 51, unknown 304.1
2019 Male, age 18, unknown 301.6
2219 Male, age 76, both hemispheres 266.2
Dorsal raphe nucleus
nTPM: 319.3
2298 Female, age 72, unknown 351.4
2016 Female, age 72, unknown 349.2
2750 Male, age 76, both hemispheres 326.6
1828 Male, age 53, unknown 307.8
2047 Male, age 72, unknown 261.6
Inferior colliculus
nTPM: 287.8
1890 Male, age 53, unknown 342.0
2097 Female, age 72, unknown 283.9
1848 Female, age 42, unknown 269.7
2849 Male, age 72, unknown 255.4
Median raphe nucleus
nTPM: 284.8
2220 Male, age 76, midline 284.8
Periaquaductal grey, anterior
nTPM: 344.8
2502 Female, age 75, unknown 413.9
1795 Male, age 51, unknown 312.6
1947 Male, age 18, unknown 307.8
Periaquaductal grey, dorsal
nTPM: 318.7
1831 Male, age 72, unknown 345.6
1840 Male, age 53, unknown 335.9
2464 Female, age 72, unknown 302.3
2850 Male, age 76, both hemispheres 291.0
Periaquaductal grey, lateral
nTPM: 288.7
2053 Male, age 18, unknown 382.9
2140 Male, age 76, both hemispheres 279.1
2272 Male, age 74, both hemispheres 204.1
Pretectal area
nTPM: 319.9
1815 Male, age 53, unknown 376.4
1817 Female, age 42, unknown 357.9
2007 Male, age 72, unknown 344.0
2316 Male, age 76, right hemisphere 341.7
1816 Male, age 51, unknown 340.5
2407 Male, age 75, both hemispheres 316.3
2667 Female, age 75, unknown 309.1
1944 Female, age 72, unknown 301.3
2224 Female, age 72, unknown 300.4
2825 Male, age 18, unknown 297.9
2273 Male, age 74, both hemispheres 233.3
Red nucleus
nTPM: 402.1
2503 Female, age 72, unknown 559.0
1865 Male, age 51, unknown 442.8
1821 Female, age 72, unknown 441.9
1904 Male, age 53, unknown 420.9
2588 Male, age 74, left hemisphere 412.3
2725 Female, age 75, unknown 406.3
2584 Male, age 75, left hemisphere 392.9
2769 Male, age 72, unknown 390.4
2227 Male, age 72, unknown 365.5
2785 Male, age 18, unknown 346.4
2823 Male, age 76, right hemisphere 334.0
1954 Female, age 42, unknown 313.2
Substantia nigra
nTPM: 418.8
1851 Male, age 51, unknown 563.7
2699 Male, age 18, unknown 520.9
2409 Female, age 72, unknown 481.1
2241 Male, age 72, unknown 453.8
1916 Female, age 42, unknown 449.5
2665 Male, age 74, both hemispheres 408.4
2590 Female, age 75, unknown 352.7
1889 Female, age 72, unknown 348.8
2583 Male, age 75, right hemisphere 310.3
1941 Male, age 53, unknown 298.3
Superior colliculus
nTPM: 361.9
2587 Male, age 74, left hemisphere 462.8
1995 Male, age 72, unknown 443.3
1913 Female, age 42, unknown 442.2
1796 Male, age 53, unknown 347.9
2668 Female, age 75, unknown 344.7
2087 Female, age 72, unknown 324.1
2664 Male, age 75, both hemispheres 320.3
1839 Male, age 51, unknown 319.6
2261 Male, age 18, unknown 310.2
1895 Male, age 76, right hemisphere 303.7
Ventral tegmental area
nTPM: 381.1
1915 Female, age 42, unknown 454.6
2410 Female, age 72, unknown 418.3
2223 Female, age 72, unknown 408.8
2021 Male, age 53, unknown 371.1
2218 Male, age 76, both hemispheres 323.7
1942 Male, age 51, unknown 310.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1499.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1499.6
Samples: 139

Max nTPM: 5876.4
Min nTPM: 448.3
Std nTPM: 690.9
Median nTPM: 1382.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5876.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3935.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3867.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 3176.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2762.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2715.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2654.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2549.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2479.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 2365.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2326.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 523.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 523.9
FF:10158-103A5 76 years, female 523.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 434.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 434.0
Samples: 4

Max nTPM: 550.6
Min nTPM: 353.5
Sample A Female 550.6
Sample B Female 464.2
Sample C Male 353.5
Sample D Male 367.7
Midbrain
nTPM: 394.8
Samples: 4

Max nTPM: 586.0
Min nTPM: 266.0
Sample A Female 586.0
Sample B Female 449.2
Sample C Male 277.8
Sample D Male 266.0
Periaqueductal gray
nTPM: 320.5
Samples: 3

Max nTPM: 365.2
Min nTPM: 287.1
Sample B Female 365.2
Sample C Male 309.2
Sample D Male 287.1
Superior colliculi
nTPM: 416.6
Samples: 4

Max nTPM: 468.8
Min nTPM: 348.1
Sample A Female 468.8
Sample B Female 467.4
Sample C Male 381.9
Sample D Male 348.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 465.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 465.4
Samples: 4

Max nTPM: 601.6
Min nTPM: 405.3
Sample A Male 601.6
Sample B Male 415.3
Sample C Female 405.3
Sample D Female 439.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
631721 Antisense, RP_040907_01_B12, Mouse strain C57BL/6J (56 days, male) 2.8
70928395 Antisense, RP_050808_02_A04, Mouse strain C57BL/6J (56 days, male) 2.4

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