MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA Brain:4.2 nTPM
GTEx:25.9 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:55.5 nTPM
Mouse:58.8 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.7
2411 Female, age 72, unknown 7.8
1870 Female, age 42, unknown 3.8
2666 Male, age 74, left hemisphere 3.6
1833 Male, age 53, unknown 3.5
2019 Male, age 18, unknown 3.4
2219 Male, age 76, both hemispheres 3.2
2586 Male, age 75, left hemisphere 3.2
2828 Female, age 72, unknown 3.1
1827 Male, age 72, unknown 2.9
1830 Male, age 51, unknown 2.7
Dorsal raphe nucleus
nTPM: 4.1
2047 Male, age 72, unknown 5.6
1828 Male, age 53, unknown 4.4
2298 Female, age 72, unknown 4.1
2750 Male, age 76, both hemispheres 3.2
2016 Female, age 72, unknown 3.0
Inferior colliculus
nTPM: 2.9
1848 Female, age 42, unknown 3.4
1890 Male, age 53, unknown 3.2
2097 Female, age 72, unknown 3.0
2849 Male, age 72, unknown 2.1
Median raphe nucleus
nTPM: 3.1
2220 Male, age 76, midline 3.1
Periaquaductal grey, anterior
nTPM: 3.1
2502 Female, age 75, unknown 3.4
1947 Male, age 18, unknown 3.1
1795 Male, age 51, unknown 2.7
Periaquaductal grey, dorsal
nTPM: 2.7
2850 Male, age 76, both hemispheres 3.6
1840 Male, age 53, unknown 2.8
2464 Female, age 72, unknown 2.5
1831 Male, age 72, unknown 2.0
Periaquaductal grey, lateral
nTPM: 2.9
2140 Male, age 76, both hemispheres 3.5
2272 Male, age 74, both hemispheres 2.9
2053 Male, age 18, unknown 2.3
Pretectal area
nTPM: 3.6
1944 Female, age 72, unknown 8.9
1817 Female, age 42, unknown 4.0
2273 Male, age 74, both hemispheres 3.5
2667 Female, age 75, unknown 3.5
2224 Female, age 72, unknown 3.4
2316 Male, age 76, right hemisphere 3.4
1815 Male, age 53, unknown 3.1
1816 Male, age 51, unknown 2.8
2007 Male, age 72, unknown 2.6
2407 Male, age 75, both hemispheres 2.6
2825 Male, age 18, unknown 2.4
Red nucleus
nTPM: 3.6
2785 Male, age 18, unknown 7.2
1904 Male, age 53, unknown 3.7
2503 Female, age 72, unknown 3.7
1954 Female, age 42, unknown 3.5
2725 Female, age 75, unknown 3.5
1865 Male, age 51, unknown 3.4
2769 Male, age 72, unknown 3.3
1821 Female, age 72, unknown 3.2
2227 Male, age 72, unknown 3.2
2588 Male, age 74, left hemisphere 3.0
2823 Male, age 76, right hemisphere 3.0
2584 Male, age 75, left hemisphere 2.0
Substantia nigra
nTPM: 4.1
2241 Male, age 72, unknown 8.5
1916 Female, age 42, unknown 5.1
1851 Male, age 51, unknown 4.2
1941 Male, age 53, unknown 4.1
2665 Male, age 74, both hemispheres 3.7
2699 Male, age 18, unknown 3.6
2409 Female, age 72, unknown 3.4
2590 Female, age 75, unknown 3.2
1889 Female, age 72, unknown 2.7
2583 Male, age 75, right hemisphere 2.6
Superior colliculus
nTPM: 2.9
1796 Male, age 53, unknown 3.4
1895 Male, age 76, right hemisphere 3.3
2587 Male, age 74, left hemisphere 3.3
1913 Female, age 42, unknown 3.2
2668 Female, age 75, unknown 3.2
1839 Male, age 51, unknown 2.9
1995 Male, age 72, unknown 2.7
2261 Male, age 18, unknown 2.6
2664 Male, age 75, both hemispheres 2.5
2087 Female, age 72, unknown 2.0
Ventral tegmental area
nTPM: 4.2
1942 Male, age 51, unknown 6.5
1915 Female, age 42, unknown 4.6
2410 Female, age 72, unknown 4.4
2218 Male, age 76, both hemispheres 3.5
2223 Female, age 72, unknown 3.4
2021 Male, age 53, unknown 2.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.9
Samples: 139

Max nTPM: 53.7
Min nTPM: 11.1
Std nTPM: 8.0
Median nTPM: 24.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 53.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 43.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 41.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 40.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 39.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.6
Samples: 4

Max nTPM: 68.0
Min nTPM: 44.8
Sample A Female 68.0
Sample B Female 44.8
Sample C Male 61.0
Sample D Male 48.4
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 65.6
Min nTPM: 46.2
Sample A Female 65.6
Sample B Female 55.4
Sample C Male 48.8
Sample D Male 46.2
Periaqueductal gray
nTPM: 47.1
Samples: 3

Max nTPM: 51.6
Min nTPM: 42.5
Sample B Female 47.3
Sample C Male 51.6
Sample D Male 42.5
Superior colliculi
nTPM: 53.7
Samples: 4

Max nTPM: 63.0
Min nTPM: 43.9
Sample A Female 63.0
Sample B Female 43.9
Sample C Male 51.5
Sample D Male 56.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.8
Samples: 4

Max nTPM: 62.3
Min nTPM: 54.0
Sample A Male 62.3
Sample B Male 54.0
Sample C Female 59.1
Sample D Female 59.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
69873953 Antisense, RP_050512_02_D03, Mouse strain C57BL/6J (56 days, male) 9.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org