MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:189.7 nTPM
HPA Brain:980.0 nTPM
GTEx:189.7 nTPM
FANTOM5:1406.8 Scaled Tags Per Million
Pig:611.2 nTPM
Mouse:178.9 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 980.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 775.4
1870 Female, age 42, unknown 1009.8
1830 Male, age 51, unknown 986.7
1833 Male, age 53, unknown 969.1
2411 Female, age 72, unknown 856.8
2019 Male, age 18, unknown 826.6
2828 Female, age 72, unknown 739.5
1827 Male, age 72, unknown 628.3
2666 Male, age 74, left hemisphere 621.4
2219 Male, age 76, both hemispheres 575.9
2586 Male, age 75, left hemisphere 539.8
Dorsal raphe nucleus
nTPM: 659.0
2750 Male, age 76, both hemispheres 901.1
2016 Female, age 72, unknown 780.7
1828 Male, age 53, unknown 667.1
2047 Male, age 72, unknown 484.4
2298 Female, age 72, unknown 461.6
Inferior colliculus
nTPM: 650.6
1848 Female, age 42, unknown 685.3
2849 Male, age 72, unknown 678.1
1890 Male, age 53, unknown 652.9
2097 Female, age 72, unknown 586.0
Median raphe nucleus
nTPM: 640.4
2220 Male, age 76, midline 640.4
Periaquaductal grey, anterior
nTPM: 510.7
2502 Female, age 75, unknown 553.4
1947 Male, age 18, unknown 543.4
1795 Male, age 51, unknown 435.2
Periaquaductal grey, dorsal
nTPM: 607.5
2850 Male, age 76, both hemispheres 772.8
2464 Female, age 72, unknown 641.3
1831 Male, age 72, unknown 558.0
1840 Male, age 53, unknown 457.8
Periaquaductal grey, lateral
nTPM: 613.8
2140 Male, age 76, both hemispheres 681.8
2053 Male, age 18, unknown 601.8
2272 Male, age 74, both hemispheres 557.8
Pretectal area
nTPM: 606.4
2316 Male, age 76, right hemisphere 778.4
1815 Male, age 53, unknown 741.1
2667 Female, age 75, unknown 697.0
1817 Female, age 42, unknown 637.7
2825 Male, age 18, unknown 616.2
2407 Male, age 75, both hemispheres 609.1
2224 Female, age 72, unknown 586.9
2273 Male, age 74, both hemispheres 586.1
2007 Male, age 72, unknown 530.3
1944 Female, age 72, unknown 484.7
1816 Male, age 51, unknown 402.8
Red nucleus
nTPM: 980.0
1865 Male, age 51, unknown 1198.0
1904 Male, age 53, unknown 1158.1
1821 Female, age 72, unknown 1109.7
1954 Female, age 42, unknown 1105.1
2823 Male, age 76, right hemisphere 1069.7
2227 Male, age 72, unknown 1059.6
2503 Female, age 72, unknown 1046.4
2769 Male, age 72, unknown 1042.8
2785 Male, age 18, unknown 922.2
2725 Female, age 75, unknown 759.3
2588 Male, age 74, left hemisphere 722.1
2584 Male, age 75, left hemisphere 566.3
Substantia nigra
nTPM: 665.1
2699 Male, age 18, unknown 872.0
2409 Female, age 72, unknown 785.9
1851 Male, age 51, unknown 699.9
2583 Male, age 75, right hemisphere 697.7
1889 Female, age 72, unknown 676.0
2241 Male, age 72, unknown 662.4
2590 Female, age 75, unknown 633.2
1941 Male, age 53, unknown 567.1
1916 Female, age 42, unknown 559.3
2665 Male, age 74, both hemispheres 497.8
Superior colliculus
nTPM: 695.7
1913 Female, age 42, unknown 1026.6
1995 Male, age 72, unknown 1008.4
1895 Male, age 76, right hemisphere 784.8
1839 Male, age 51, unknown 722.8
2587 Male, age 74, left hemisphere 714.0
2668 Female, age 75, unknown 689.7
1796 Male, age 53, unknown 552.0
2087 Female, age 72, unknown 524.3
2664 Male, age 75, both hemispheres 492.3
2261 Male, age 18, unknown 441.8
Ventral tegmental area
nTPM: 698.0
2223 Female, age 72, unknown 916.3
2410 Female, age 72, unknown 727.7
2218 Male, age 76, both hemispheres 669.8
1942 Male, age 51, unknown 637.4
2021 Male, age 53, unknown 625.7
1915 Female, age 42, unknown 611.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 189.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 189.7
Samples: 139

Max nTPM: 358.6
Min nTPM: 53.4
Std nTPM: 61.7
Median nTPM: 178.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 358.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 357.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 333.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 316.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 316.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 314.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 311.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 309.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 305.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 302.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 301.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1406.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1406.8
FF:10158-103A5 76 years, female 1406.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 611.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 566.9
Samples: 4

Max nTPM: 773.3
Min nTPM: 440.8
Sample A Female 555.5
Sample B Female 440.8
Sample C Male 498.0
Sample D Male 773.3
Midbrain
nTPM: 611.2
Samples: 4

Max nTPM: 980.4
Min nTPM: 394.1
Sample A Female 980.4
Sample B Female 652.1
Sample C Male 418.1
Sample D Male 394.1
Periaqueductal gray
nTPM: 498.8
Samples: 3

Max nTPM: 566.1
Min nTPM: 425.7
Sample B Female 566.1
Sample C Male 425.7
Sample D Male 504.6
Superior colliculi
nTPM: 433.2
Samples: 4

Max nTPM: 522.6
Min nTPM: 257.3
Sample A Female 478.9
Sample B Female 257.3
Sample C Male 473.9
Sample D Male 522.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 178.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 179.0
Samples: 4

Max nTPM: 188.4
Min nTPM: 168.5
Sample A Male 168.5
Sample B Male 178.1
Sample C Female 188.4
Sample D Female 180.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
1151 Antisense, RP_Baylor_102604, Mouse strain C57BL/6J (56 days, male) 15.5
68797858 Antisense, RP_050215_01_C08, Mouse strain C57BL/6J (56 days, male) 13.3
73635471 Antisense, RP_051130_02_F07, Mouse strain C57BL/6J (56 days, male) 2.4

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