MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:50.1 nTPM
GTEx:32.8 nTPM
FANTOM5:61.3 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:6.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.6
1830 Male, age 51, unknown 52.5
2586 Male, age 75, left hemisphere 50.8
2019 Male, age 18, unknown 48.8
1833 Male, age 53, unknown 47.0
2411 Female, age 72, unknown 43.1
1870 Female, age 42, unknown 41.6
2828 Female, age 72, unknown 41.2
2666 Male, age 74, left hemisphere 34.5
1827 Male, age 72, unknown 30.1
2219 Male, age 76, both hemispheres 26.4
Dorsal raphe nucleus
nTPM: 29.9
2750 Male, age 76, both hemispheres 42.9
2016 Female, age 72, unknown 33.3
1828 Male, age 53, unknown 30.3
2047 Male, age 72, unknown 24.3
2298 Female, age 72, unknown 18.6
Inferior colliculus
nTPM: 27.9
1890 Male, age 53, unknown 31.9
2849 Male, age 72, unknown 30.4
1848 Female, age 42, unknown 27.7
2097 Female, age 72, unknown 21.7
Median raphe nucleus
nTPM: 26.2
2220 Male, age 76, midline 26.2
Periaquaductal grey, anterior
nTPM: 27.9
2502 Female, age 75, unknown 32.4
1947 Male, age 18, unknown 27.8
1795 Male, age 51, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 24.3
2464 Female, age 72, unknown 31.0
2850 Male, age 76, both hemispheres 25.1
1831 Male, age 72, unknown 25.0
1840 Male, age 53, unknown 16.0
Periaquaductal grey, lateral
nTPM: 28.0
2272 Male, age 74, both hemispheres 30.4
2140 Male, age 76, both hemispheres 27.3
2053 Male, age 18, unknown 26.2
Pretectal area
nTPM: 28.0
2407 Male, age 75, both hemispheres 40.0
2316 Male, age 76, right hemisphere 39.9
1815 Male, age 53, unknown 31.9
2667 Female, age 75, unknown 29.5
2825 Male, age 18, unknown 28.9
1817 Female, age 42, unknown 28.1
2007 Male, age 72, unknown 28.0
2273 Male, age 74, both hemispheres 24.6
2224 Female, age 72, unknown 20.3
1944 Female, age 72, unknown 18.5
1816 Male, age 51, unknown 18.1
Red nucleus
nTPM: 50.1
2769 Male, age 72, unknown 58.2
1865 Male, age 51, unknown 57.4
2227 Male, age 72, unknown 55.5
1904 Male, age 53, unknown 55.2
2785 Male, age 18, unknown 54.5
2823 Male, age 76, right hemisphere 52.9
2584 Male, age 75, left hemisphere 48.2
2588 Male, age 74, left hemisphere 47.8
1821 Female, age 72, unknown 47.6
2503 Female, age 72, unknown 45.6
1954 Female, age 42, unknown 43.9
2725 Female, age 75, unknown 34.1
Substantia nigra
nTPM: 30.6
2583 Male, age 75, right hemisphere 42.7
2590 Female, age 75, unknown 35.4
2699 Male, age 18, unknown 34.4
1851 Male, age 51, unknown 32.4
2409 Female, age 72, unknown 31.9
2665 Male, age 74, both hemispheres 29.2
1889 Female, age 72, unknown 29.0
1941 Male, age 53, unknown 26.9
1916 Female, age 42, unknown 22.6
2241 Male, age 72, unknown 21.2
Superior colliculus
nTPM: 35.2
1913 Female, age 42, unknown 52.8
1995 Male, age 72, unknown 48.4
1895 Male, age 76, right hemisphere 37.1
1839 Male, age 51, unknown 36.6
2664 Male, age 75, both hemispheres 34.5
2587 Male, age 74, left hemisphere 33.0
2668 Female, age 75, unknown 33.0
1796 Male, age 53, unknown 31.1
2087 Female, age 72, unknown 22.5
2261 Male, age 18, unknown 22.3
Ventral tegmental area
nTPM: 32.7
2223 Female, age 72, unknown 42.7
2410 Female, age 72, unknown 35.6
1942 Male, age 51, unknown 32.2
2021 Male, age 53, unknown 31.4
2218 Male, age 76, both hemispheres 27.4
1915 Female, age 42, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 139

Max nTPM: 112.8
Min nTPM: 13.7
Std nTPM: 14.5
Median nTPM: 29.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 112.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 74.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 71.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 66.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 64.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 57.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 55.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 53.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 52.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.3
FF:10158-103A5 76 years, female 61.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.2
Samples: 4

Max nTPM: 40.9
Min nTPM: 23.0
Sample A Female 28.0
Sample B Female 23.0
Sample C Male 24.7
Sample D Male 40.9
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 16.4
Sample A Female 50.4
Sample B Female 27.4
Sample C Male 16.4
Sample D Male 18.7
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 24.9
Min nTPM: 22.7
Sample B Female 24.9
Sample C Male 22.7
Sample D Male 23.5
Superior colliculi
nTPM: 24.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 19.1
Sample A Female 28.8
Sample B Female 19.1
Sample C Male 21.5
Sample D Male 27.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.1
Sample A Male 8.0
Sample B Male 6.1
Sample C Female 5.1
Sample D Female 8.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69290650 Antisense, RP_050407_04_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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