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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Medium
Photoreceptor cells:
Medium
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
451.8
nTPM
GTEx:
451.8
nTPM
FANTOM5:
74.1
Scaled Tags Per Million
Pig:
81.6
nTPM
Mouse:
1800.0
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA055479
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
451.8
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 451.8
Samples: 105
Max nTPM: 858.6
Min nTPM: 151.1
Std nTPM: 139.3
Median nTPM: 0.0
218_1
71 years, female
858.6
237_1
82 years, male
762.9
384_1
83 years, male
730.8
347_1
72 years, male
728.5
389_1
86 years, female
717.9
375_1
74 years, female
716.2
319_1
81 years, male
701.3
163_1
78 years, male
682.8
425_1
59 years, female
679.9
321_1
62 years, female
657.4
447_1
81 years, male
650.9
352_1
62 years, male
640.2
6_1
73 years, female
614.0
350_1
84 years, female
608.1
322_1
76 years, male
607.5
355_1
70 years, female
607.4
386_1
76 years, male
602.3
246_1
77 years, male
600.8
243_1
75 years, male
594.8
307_1
66 years, female
584.6
35_1
74 years, female
584.3
394_1
75 years, female
581.9
2_1
77 years, female
576.7
526_1
61 years, male
538.9
354_1
81 years, female
534.7
172_1
72 years, female
531.3
379_1
60 years, male
528.9
173_1
67 years, male
525.9
316_1
62 years, male
525.5
293_1
68 years, female
520.5
480_1
63 years, male
519.7
377_1
82 years, female
516.0
406_1
79 years, male
515.8
468_1
89 years, male
507.0
503_1
68 years, male
501.1
42_1
85 years, male
500.3
217_1
76 years, male
498.4
318_1
68 years, male
494.3
126_1
63 years, male
490.4
251_1
78 years, male
489.1
405_1
91 years, male
485.9
351_1
91 years, male
483.1
189_1
76 years, male
476.6
254_1
77 years, female
460.3
348_1
84 years, male
458.7
404_1
82 years, female
450.3
349_1
83 years, male
444.5
153_1
70 years, female
444.0
517_1
88 years, male
443.5
229_1
69 years, female
441.9
4_1
88 years, female
437.4
115_1
83 years, male
430.2
317_1
60 years, male
429.4
356_1
87 years, female
428.8
177_1
74 years, male
427.2
291_1
76 years, male
426.7
99_1
64 years, male
426.3
9_1
66 years, female
423.3
137_1
83 years, male
423.2
117_1
61 years, male
419.1
292_1
71 years, male
419.0
265_1
87 years, male
413.1
266_1
85 years, male
412.1
320_1
89 years, female
411.5
518_1
75 years, female
410.9
335_1
73 years, female
401.9
41_1
94 years, female
400.8
376_1
75 years, female
391.9
311_1
78 years, male
390.9
396_1
62 years, male
383.7
145_1
84 years, male
383.6
286_1
68 years, female
372.1
162_1
79 years, female
370.8
495_1
57 years, female
370.4
452_1
88 years, female
365.0
18_1
88 years, male
364.2
313_1
79 years, female
364.2
139_1
64 years, female
358.5
17_1
71 years, male
355.4
414_1
84 years, female
350.7
353_1
82 years, female
347.0
120_1
70 years, female
344.5
119_1
70 years, female
339.3
295_1
61 years, female
332.4
264_1
73 years, female
330.4
490_1
67 years, female
327.5
89_1
63 years, male
321.2
314_1
67 years, male
309.0
43_1
64 years, female
306.9
109_1
81 years, female
306.1
324_1
76 years, male
304.6
81_1
67 years, male
304.0
315_1
62 years, female
299.1
499_1
55 years, female
293.7
142_1
61 years, female
293.5
415_1
77 years, female
291.8
506_1
65 years, male
273.9
32_1
67 years, male
271.2
466_1
57 years, female
269.3
288_1
66 years, female
231.1
149_1
88 years, male
217.8
491_1
89 years, female
213.5
413_1
59 years, female
196.3
308_1
70 years, female
189.6
501_1
88 years, male
151.1
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.