MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.5 nTPM
HPA Brain:120.3 nTPM
GTEx:59.5 nTPM
FANTOM5:281.4 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:299.6 nTPM
Allen mouse:15.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 120.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 104.3
2411 Female, age 72, unknown 125.2
2019 Male, age 18, unknown 124.1
1870 Female, age 42, unknown 112.1
1827 Male, age 72, unknown 110.1
2666 Male, age 74, left hemisphere 103.2
2586 Male, age 75, left hemisphere 102.7
2828 Female, age 72, unknown 97.7
1833 Male, age 53, unknown 94.4
1830 Male, age 51, unknown 89.0
2219 Male, age 76, both hemispheres 84.1
Dorsal raphe nucleus
nTPM: 119.1
2298 Female, age 72, unknown 150.9
2047 Male, age 72, unknown 121.0
1828 Male, age 53, unknown 110.8
2750 Male, age 76, both hemispheres 106.7
2016 Female, age 72, unknown 106.3
Inferior colliculus
nTPM: 105.0
2097 Female, age 72, unknown 129.1
1890 Male, age 53, unknown 107.9
1848 Female, age 42, unknown 102.4
2849 Male, age 72, unknown 80.7
Median raphe nucleus
nTPM: 110.1
2220 Male, age 76, midline 110.1
Periaquaductal grey, anterior
nTPM: 117.6
1947 Male, age 18, unknown 125.1
2502 Female, age 75, unknown 124.4
1795 Male, age 51, unknown 103.4
Periaquaductal grey, dorsal
nTPM: 95.3
1840 Male, age 53, unknown 104.4
2464 Female, age 72, unknown 100.3
1831 Male, age 72, unknown 94.9
2850 Male, age 76, both hemispheres 81.7
Periaquaductal grey, lateral
nTPM: 92.8
2272 Male, age 74, both hemispheres 102.4
2053 Male, age 18, unknown 99.2
2140 Male, age 76, both hemispheres 76.8
Pretectal area
nTPM: 114.9
2007 Male, age 72, unknown 141.8
1817 Female, age 42, unknown 130.5
1816 Male, age 51, unknown 129.2
1944 Female, age 72, unknown 127.8
2224 Female, age 72, unknown 121.9
1815 Male, age 53, unknown 121.6
2273 Male, age 74, both hemispheres 109.4
2667 Female, age 75, unknown 105.5
2407 Male, age 75, both hemispheres 97.3
2825 Male, age 18, unknown 94.2
2316 Male, age 76, right hemisphere 84.6
Red nucleus
nTPM: 106.9
1821 Female, age 72, unknown 141.0
2503 Female, age 72, unknown 115.2
1865 Male, age 51, unknown 114.1
2785 Male, age 18, unknown 110.0
1954 Female, age 42, unknown 108.2
1904 Male, age 53, unknown 107.6
2227 Male, age 72, unknown 106.2
2769 Male, age 72, unknown 106.1
2725 Female, age 75, unknown 100.2
2584 Male, age 75, left hemisphere 97.1
2588 Male, age 74, left hemisphere 88.6
2823 Male, age 76, right hemisphere 88.4
Substantia nigra
nTPM: 120.3
1916 Female, age 42, unknown 143.7
1851 Male, age 51, unknown 137.7
2409 Female, age 72, unknown 135.2
1889 Female, age 72, unknown 134.5
2241 Male, age 72, unknown 127.2
1941 Male, age 53, unknown 121.8
2583 Male, age 75, right hemisphere 111.6
2590 Female, age 75, unknown 102.6
2665 Male, age 74, both hemispheres 97.5
2699 Male, age 18, unknown 90.7
Superior colliculus
nTPM: 105.1
2668 Female, age 75, unknown 130.2
2261 Male, age 18, unknown 115.5
2587 Male, age 74, left hemisphere 110.6
2087 Female, age 72, unknown 107.0
1913 Female, age 42, unknown 105.7
1796 Male, age 53, unknown 103.2
1839 Male, age 51, unknown 98.2
1895 Male, age 76, right hemisphere 98.2
1995 Male, age 72, unknown 92.1
2664 Male, age 75, both hemispheres 90.7
Ventral tegmental area
nTPM: 110.9
2410 Female, age 72, unknown 138.4
1915 Female, age 42, unknown 109.7
1942 Male, age 51, unknown 109.2
2223 Female, age 72, unknown 103.8
2021 Male, age 53, unknown 102.5
2218 Male, age 76, both hemispheres 101.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.5
Samples: 139

Max nTPM: 97.1
Min nTPM: 33.4
Std nTPM: 11.5
Median nTPM: 57.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 97.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 96.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 91.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 81.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 79.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 78.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 76.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 76.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 75.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 75.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 281.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 281.4
FF:10158-103A5 76 years, female 281.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.6
Samples: 4

Max nTPM: 106.0
Min nTPM: 64.8
Sample A Female 106.0
Sample B Female 77.1
Sample C Male 102.5
Sample D Male 64.8
Midbrain
nTPM: 100.6
Samples: 4

Max nTPM: 132.8
Min nTPM: 83.5
Sample A Female 84.2
Sample B Female 83.5
Sample C Male 132.8
Sample D Male 102.0
Periaqueductal gray
nTPM: 74.4
Samples: 3

Max nTPM: 83.2
Min nTPM: 68.6
Sample B Female 71.5
Sample C Male 83.2
Sample D Male 68.6
Superior colliculi
nTPM: 99.3
Samples: 4

Max nTPM: 127.8
Min nTPM: 75.6
Sample A Female 102.8
Sample B Female 75.6
Sample C Male 127.8
Sample D Male 91.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 299.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 299.6
Samples: 4

Max nTPM: 315.8
Min nTPM: 284.7
Sample A Male 284.7
Sample B Male 315.8
Sample C Female 307.1
Sample D Female 290.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
70429214 Antisense, RP_050614_01_C04, Mouse strain C57BL/6J (56 days, male) 16.7
81600550 Antisense, RP_080402_04_A11, Mouse strain C57BL/6J (56 days, male) 14.7

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