MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.3 nTPM
HPA Brain:27.1 nTPM
GTEx:6.3 nTPM
FANTOM5:19.9 Scaled Tags Per Million
Pig:9.2 nTPM
Mouse:29.0 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2219 Male, age 76, both hemispheres 34.9
2666 Male, age 74, left hemisphere 29.2
1827 Male, age 72, unknown 26.1
1830 Male, age 51, unknown 22.3
2586 Male, age 75, left hemisphere 22.3
2019 Male, age 18, unknown 22.1
1833 Male, age 53, unknown 22.0
2828 Female, age 72, unknown 20.7
2411 Female, age 72, unknown 20.4
1870 Female, age 42, unknown 18.2
Dorsal raphe nucleus
nTPM: 24.6
2047 Male, age 72, unknown 30.8
1828 Male, age 53, unknown 28.4
2298 Female, age 72, unknown 25.1
2016 Female, age 72, unknown 21.2
2750 Male, age 76, both hemispheres 17.5
Inferior colliculus
nTPM: 27.1
2849 Male, age 72, unknown 31.3
2097 Female, age 72, unknown 28.6
1890 Male, age 53, unknown 25.8
1848 Female, age 42, unknown 22.6
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Periaquaductal grey, anterior
nTPM: 23.6
1795 Male, age 51, unknown 24.4
1947 Male, age 18, unknown 24.3
2502 Female, age 75, unknown 22.1
Periaquaductal grey, dorsal
nTPM: 23.8
1840 Male, age 53, unknown 26.6
1831 Male, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 23.0
2464 Female, age 72, unknown 22.6
Periaquaductal grey, lateral
nTPM: 24.9
2140 Male, age 76, both hemispheres 26.4
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 22.6
Pretectal area
nTPM: 24.3
1816 Male, age 51, unknown 29.4
2007 Male, age 72, unknown 28.9
1817 Female, age 42, unknown 26.9
2407 Male, age 75, both hemispheres 25.7
1944 Female, age 72, unknown 25.2
2224 Female, age 72, unknown 24.8
2316 Male, age 76, right hemisphere 24.0
1815 Male, age 53, unknown 21.6
2825 Male, age 18, unknown 21.6
2273 Male, age 74, both hemispheres 21.3
2667 Female, age 75, unknown 18.0
Red nucleus
nTPM: 19.4
2584 Male, age 75, left hemisphere 31.5
2725 Female, age 75, unknown 24.8
2785 Male, age 18, unknown 23.9
2823 Male, age 76, right hemisphere 20.3
1821 Female, age 72, unknown 18.3
2588 Male, age 74, left hemisphere 17.8
2227 Male, age 72, unknown 17.7
2769 Male, age 72, unknown 17.3
1954 Female, age 42, unknown 16.3
2503 Female, age 72, unknown 15.7
1865 Male, age 51, unknown 15.5
1904 Male, age 53, unknown 13.8
Substantia nigra
nTPM: 26.7
2590 Female, age 75, unknown 34.4
2665 Male, age 74, both hemispheres 30.3
2583 Male, age 75, right hemisphere 29.6
1941 Male, age 53, unknown 29.4
1916 Female, age 42, unknown 29.0
2699 Male, age 18, unknown 25.9
1889 Female, age 72, unknown 24.2
1851 Male, age 51, unknown 23.9
2241 Male, age 72, unknown 21.7
2409 Female, age 72, unknown 18.7
Superior colliculus
nTPM: 22.1
2664 Male, age 75, both hemispheres 29.3
2587 Male, age 74, left hemisphere 29.1
2087 Female, age 72, unknown 25.7
1839 Male, age 51, unknown 23.3
1796 Male, age 53, unknown 22.7
2261 Male, age 18, unknown 21.9
1895 Male, age 76, right hemisphere 20.8
2668 Female, age 75, unknown 17.9
1995 Male, age 72, unknown 15.9
1913 Female, age 42, unknown 14.5
Ventral tegmental area
nTPM: 23.9
1915 Female, age 42, unknown 26.9
2218 Male, age 76, both hemispheres 25.8
2021 Male, age 53, unknown 25.6
1942 Male, age 51, unknown 24.6
2410 Female, age 72, unknown 22.8
2223 Female, age 72, unknown 18.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.3
Samples: 139

Max nTPM: 28.5
Min nTPM: 0.0
Std nTPM: 4.0
Median nTPM: 5.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 17.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 15.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 15.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 15.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 14.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 14.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 12.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 11.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.9
FF:10158-103A5 76 years, female 19.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 7.9
Sample C Male 8.4
Sample D Male 7.6
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 16.1
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 7.1
Sample C Male 16.1
Sample D Male 8.5
Periaqueductal gray
nTPM: 7.9
Samples: 3

Max nTPM: 8.6
Min nTPM: 7.3
Sample B Female 7.3
Sample C Male 8.6
Sample D Male 7.8
Superior colliculi
nTPM: 8.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.4
Sample A Female 7.6
Sample B Female 7.4
Sample C Male 11.7
Sample D Male 8.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 30.5
Min nTPM: 27.6
Sample A Male 28.9
Sample B Male 30.5
Sample C Female 27.6
Sample D Female 29.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
1839 Antisense, RP_040507_02_A05, Mouse strain C57BL/6J (56 days, male) 0.4
1838 Antisense, RP_040507_02_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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