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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
High
Limiting membrane:
Not detected
Nerve fiber layer:
High
Outer plexiform layer:
High
Photoreceptor cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.3
nTPM
GTEx:
41.3
nTPM
FANTOM5:
17.4
Scaled Tags Per Million
Pig:
58.3
nTPM
Mouse:
18.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA014511
Pigment epithelial cells
Not detected
Photoreceptor cells
Not detected
Limiting membrane
Not detected
Outer plexiform layer
High
Inner nuclear layer
Not detected
Inner plexiform layer
High
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
41.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 41.3
Samples: 105
Max nTPM: 112.9
Min nTPM: 10.0
Std nTPM: 18.9
Median nTPM:
295_1
61 years, female
112.9
506_1
65 years, male
105.1
350_1
84 years, female
89.3
349_1
83 years, male
79.9
352_1
62 years, male
79.9
452_1
88 years, female
77.6
264_1
73 years, female
72.6
153_1
70 years, female
67.7
319_1
81 years, male
65.8
394_1
75 years, female
63.7
356_1
87 years, female
62.4
354_1
81 years, female
61.4
351_1
91 years, male
60.6
389_1
86 years, female
60.6
480_1
63 years, male
59.1
173_1
67 years, male
58.8
396_1
62 years, male
58.1
314_1
67 years, male
57.5
286_1
68 years, female
56.9
292_1
71 years, male
56.8
313_1
79 years, female
55.3
355_1
70 years, female
53.5
321_1
62 years, female
53.1
243_1
75 years, male
52.9
405_1
91 years, male
52.4
177_1
74 years, male
51.6
503_1
68 years, male
51.1
99_1
64 years, male
51.0
265_1
87 years, male
50.4
318_1
68 years, male
49.2
320_1
89 years, female
49.1
526_1
61 years, male
49.1
425_1
59 years, female
48.9
335_1
73 years, female
48.8
163_1
78 years, male
47.9
376_1
75 years, female
47.3
229_1
69 years, female
46.8
115_1
83 years, male
46.7
379_1
60 years, male
46.0
348_1
84 years, male
45.7
375_1
74 years, female
45.7
406_1
79 years, male
45.3
317_1
60 years, male
44.9
386_1
76 years, male
44.2
353_1
82 years, female
43.9
6_1
73 years, female
43.1
517_1
88 years, male
42.7
237_1
82 years, male
41.4
172_1
72 years, female
41.3
4_1
88 years, female
41.0
347_1
72 years, male
40.5
218_1
71 years, female
40.3
316_1
62 years, male
38.6
142_1
61 years, female
38.5
254_1
77 years, female
38.4
109_1
81 years, female
38.2
120_1
70 years, female
38.0
404_1
82 years, female
37.4
384_1
83 years, male
34.9
324_1
76 years, male
34.6
117_1
61 years, male
34.4
447_1
81 years, male
34.0
9_1
66 years, female
33.8
18_1
88 years, male
33.7
35_1
74 years, female
31.7
518_1
75 years, female
31.6
308_1
70 years, female
31.3
468_1
89 years, male
31.2
42_1
85 years, male
30.1
32_1
67 years, male
29.7
293_1
68 years, female
29.7
377_1
82 years, female
29.7
217_1
76 years, male
29.3
288_1
66 years, female
29.3
291_1
76 years, male
29.3
322_1
76 years, male
28.9
145_1
84 years, male
28.7
499_1
55 years, female
28.1
137_1
83 years, male
27.4
466_1
57 years, female
27.3
251_1
78 years, male
27.1
119_1
70 years, female
26.9
17_1
71 years, male
26.2
189_1
76 years, male
26.1
415_1
77 years, female
26.1
315_1
62 years, female
26.0
501_1
88 years, male
25.8
81_1
67 years, male
23.9
414_1
84 years, female
23.7
162_1
79 years, female
23.2
266_1
85 years, male
23.2
311_1
78 years, male
23.1
246_1
77 years, male
21.6
43_1
64 years, female
20.0
126_1
63 years, male
19.6
139_1
64 years, female
19.0
41_1
94 years, female
18.4
413_1
59 years, female
17.9
2_1
77 years, female
17.6
89_1
63 years, male
16.5
307_1
66 years, female
15.0
490_1
67 years, female
13.8
149_1
88 years, male
10.8
491_1
89 years, female
10.4
495_1
57 years, female
10.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
